Browse Element(s) Details


Os.50645.1.S1_a_at

Description gb:AY341859.1
DB_XREF= gi:33519205
TID=Os.50645.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50645 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
PROD=WRKY19
FL= gb:AY341859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5508011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55040Os.2900.1.S1_at11/113+31237815..31239950UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g55050Os.54157.1.S1_at11/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55050Os.54157.1.S2_at10/113+31241657..31244176Glucosyl transferase, putative, expressed
LOC_Os03g55070Os.5016.1.S1_at11/113+31254754..31257340UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os03g55080Os.50645.1.S1_a_at11/113+31262144..31265875WRKY DNA binding domain containing protein, expressed
LOC_Os03g55080Os.49478.1.S1_at1/113+31262144..31265875WRKY DNA binding domain containing protein, expressed
LOC_Os03g55090Os.11216.1.S1_at3/113+31271345..31278112glycogen/starch/alpha-glucan phosphorylases family protein, expressed
LOC_Os03g55094NANA3+31282257..31282562hypothetical protein
LOC_Os03g55100Os.49313.1.S1_a_at11/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed
LOC_Os03g55100OsAffx.23819.2.S1_x_at1/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50645.1.S1_a_at--533--4511Chr03:31262644..31262668 (25 bp)
GCCGAGCAAATGTCGGCGTTCGTCT
LOC_Os03g55080
Os.50645.1.S1_a_at--682--4391Chr03:31262612..31262636 (25 bp)
GCCACAGCCGCATATGCTGTACGGT
LOC_Os03g55080
Os.50645.1.S1_a_at--933--4931Chr03:31262603..31262627 (25 bp)
GCATATGCTGTACGGTTTACCCCGG
LOC_Os03g55080
Os.50645.1.S1_a_at--90--10011Chr03:31262600..31262624 (25 bp)
TATGCTGTACGGTTTACCCCGGTTG
LOC_Os03g55080
Os.50645.1.S1_a_at--237--1871Chr03:31262533..31262557 (25 bp)
ACGACGACGTCTTTGCAGGAGCTGA
LOC_Os03g55080
Os.50645.1.S1_a_at--175--5791Chr03:31262531..31262555 (25 bp)
GACGACGTCTTTGCAGGAGCTGAAC
LOC_Os03g55080
Os.50645.1.S1_a_at--516--9191Chr03:31262421..31262445 (25 bp)
TGCCTCCGGCTGTTTCGTTTGACAA
LOC_Os03g55080
Os.50645.1.S1_a_at--253--4851Chr03:31262393..31262417 (25 bp)
GCTACTTGATGATATTGTGCCTCCT
LOC_Os03g55080
Os.50645.1.S1_a_at--1133--10771Chr03:31262388..31262412 (25 bp)
TTGATGATATTGTGCCTCCTGGAGT
LOC_Os03g55080
Os.50645.1.S1_a_at--474--7291Chr03:31262377..31262401 (25 bp)
GTGCCTCCTGGAGTTAGACTTGGAT
LOC_Os03g55080
Os.50645.1.S1_a_at--179--6791Chr03:31262365..31262389 (25 bp)
GTTAGACTTGGATGACAATACTCAA
LOC_Os03g55080
Target Sequence 
GCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTC
CTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCC
CNTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCNNNNNCCGTCGCCGTCGGTGCCTCCGGCTGTTTC
GTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTTAGACTTGGATGACAATACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50645.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis