Browse Element(s) Details


Os.49313.1.S1_a_at

Description gb:AK060339.1
DB_XREF= gi:32970357
TID=Os.49313.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C12, full insert sequence.
FL= gb:AK060339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5510011/11Cyclic nucleotide-gated ion channel 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55080Os.50645.1.S1_a_at11/113+31262144..31265875WRKY DNA binding domain containing protein, expressed
LOC_Os03g55080Os.49478.1.S1_at1/113+31262144..31265875WRKY DNA binding domain containing protein, expressed
LOC_Os03g55090Os.11216.1.S1_at3/113+31271345..31278112glycogen/starch/alpha-glucan phosphorylases family protein, expressed
LOC_Os03g55094NANA3+31282257..31282562hypothetical protein
LOC_Os03g55100Os.49313.1.S1_a_at11/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed
LOC_Os03g55100OsAffx.23819.2.S1_x_at1/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed
LOC_Os03g55110Os.49788.1.S1_at10/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55110Os.49788.2.S1_x_at9/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55120Os.50909.2.S1_s_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55120Os.50909.1.S1_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0016020cellular_componentmembrane
GO:0005216molecular_functionion channel activity
GO:0005221molecular_functionintracellular cyclic nucleotide activated cation channel activity
GO:0005222molecular_functionintracellular cAMP activated cation channel activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0008324molecular_functioncation transporter activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49313.1.S1_a_at--828--4891Chr03:31289261..31289285 (25 bp)
GCTTCATCACGGAGCAGTTCCGGTA
LOC_Os03g55100
Os.49313.1.S1_a_at--177--1531Chr03:31289273..31289297 (25 bp)
AGCAGTTCCGGTACAAGTTCGCCAA
LOC_Os03g55100
Os.49313.1.S1_a_at--297--4331Chr03:31289469..31289493 (25 bp)
CCATTACGCGGCCATGTTCATGTCG
LOC_Os03g55100
Os.49313.1.S1_a_at--33--891Chr03:31289497..31289521 (25 bp)
AGGCCACACGATCACCTCGAGTGAG
LOC_Os03g55100
Os.49313.1.S1_a_at--81--4291Chr03:31289511..31289535 (25 bp)
CCTCGAGTGAGAGCAGCCGTGGATT
LOC_Os03g55100
Os.49313.1.S1_a_at--695--10131Chr03:31289557..31289581 (25 bp)
TATGCAATGCAACCGTACGCGCATG
LOC_Os03g55100
Os.49313.1.S1_a_at--306--6991Chr03:31289571..31289595 (25 bp)
GTACGCGCATGGAGCGGACCACCCT
LOC_Os03g55100
Os.49313.1.S1_a_at--130--9171Chr03:31289595..31289619 (25 bp)
TGCGCCGGCCATATATCATTGATTC
LOC_Os03g55100
Os.49313.1.S1_a_at--112--3611Chr03:31289611..31289635 (25 bp)
CATTGATTCCATTGTAGTACGATCG
LOC_Os03g55100
Os.49313.1.S1_a_at--130--1191Chr03:31289626..31289650 (25 bp)
AGTACGATCGTATCCTGCTGCCGGT
LOC_Os03g55100
Os.49313.1.S1_a_at--630--4771Chr03:31289642..31289666 (25 bp)
GCTGCCGGTCTTGACAATTGATTAG
LOC_Os03g55100
Target Sequence 
GCTTCATCACGGAGCAGTTCCGGTACAAGTTCGCCAACGAGAAGCTCAAGCNGACGGCGCGCTACTACTCCTCCAACTGG
CGGACGTGGGCGGCCGTCAACATCCAGCTCGCGTGGCGCCGGTACAAGGCAAGGACGACGACCGACCTGGCGTCGGCGGC
GCAGCCGCCGTCCGCCGGCGGGCCCGACGACGGGGACCGCCGGCTCCGCCATTACGCGGCCATGTTCATGTCGCTCAGGC
CACACGATCACCTCGAGTGAGAGCAGCCGTGGATTGGGACCGAGAGTGACGGGGCATATGCAATGCAACCGTACGCGCAT
GGAGCGGACCACCCTGCGCCGGCCATATATCATTGATTCCATTGTAGTACGATCGTATCCTGCTGCCGGTCTTGACAATT
GATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49313.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis