Browse Element(s) Details


Os.49788.2.S1_x_at

Description gb:AK062704.1
DB_XREF= gi:32972722
TID=Os.49788.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B05, full insert sequence.
FL= gb:AK062704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g551109/1126S proteasome non-ATPase regulatory subunit 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55090Os.11216.1.S1_at3/113+31271345..31278112glycogen/starch/alpha-glucan phosphorylases family protein, expressed
LOC_Os03g55094NANA3+31282257..31282562hypothetical protein
LOC_Os03g55100Os.49313.1.S1_a_at11/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed
LOC_Os03g55100OsAffx.23819.2.S1_x_at1/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed
LOC_Os03g55110Os.49788.1.S1_at10/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55110Os.49788.2.S1_x_at9/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55120Os.50909.2.S1_s_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55120Os.50909.1.S1_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55130Os.26714.1.S1_at9/113+31317009..31320400expressed protein
LOC_Os03g55140Os.54730.1.S1_at10/113+31321240..31326138transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0009932biological_processcell tip growth
GO:0000035molecular_functionacyl binding
GO:0005515molecular_functionprotein binding
GO:0016417molecular_functionS-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49788.2.S1_x_at--817--2351Chr03:31294084..31294108 (25 bp)
AAAGCTGAGATCATCTCCATCCTGC
LOC_Os03g55110
Os.49788.2.S1_x_at--695--3531NONE
CATCCTGCTCGATCAAGGTGCTAAT
NONE
Os.49788.2.S1_x_at--1010--3831Chr03:31294993..31295017 (25 bp)
CTGCTCTTCATTATGCTGCCAGTAA
LOC_Os03g55110
Os.49788.2.S1_x_at--211--8151Chr03:31295684..31295708 (25 bp)
GGACAAACACCACTAATGCATGCTG
LOC_Os03g55110
Os.49788.2.S1_x_at--875--3012Chr06:13444273..13444292 (20 bp)
AATGCATGCTGTTATTTCTGAGGAC
NONE
Os.49788.2.S1_x_at--511--7911Chr03:31296097..31296121 (25 bp)
GGTTGCTCTTCTGCTAGTTAGACAT
LOC_Os03g55110
Os.49788.2.S1_x_at--961--7771Chr03:31296122..31296146 (25 bp)
GGTGCTGATGTTGCCATTGAGGACA
LOC_Os03g55110
Os.49788.2.S1_x_at--448--1791Chr03:31296158..31296182 (25 bp)
ACCGTACTTGGTCGAGCATCTGATA
LOC_Os03g55110
Os.49788.2.S1_x_at--714--471Chr03:31296175..31296199 (25 bp)
ATCTGATAGCTTTAGACCTGCACTA
LOC_Os03g55110
Os.49788.2.S1_x_at--659--10571Chr03:31296303..31296327 (25 bp)
TTGGTTGAATCCTGTCTTTTTTAAG
LOC_Os03g55110
Os.49788.2.S1_x_at--860--8091Chr03:31296366..31296390 (25 bp)
GGACCATAATTCATACTAGCCAAGA
NONE
Target Sequence 
AAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGACAACCGATGCTGGCCGGACTGCTCTTCA
TTATGCTGCCAGTAAAGGACGGCTTAATATAGCAGAAACACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAGG
AAATGCTGAACTGTGTGAATTCCTAATTGAGGAGGGGGCTGATGTTGATGCAGTTGACAAAACAGGACAAACACCACTAA
TGCATGCTGTTATTTCTGAGGACAAAGCGGTTGCTCTTCTGCTAGTTAGACATGGTGCTGATGTTGCCATTGAGGACAAG
GAAGGCTATACCGTACTTGGTCGAGCATCTGATAGCTTTAGACCTGCACTAATTGATGCAGCCAAGGCAATGCTTGAAGG
CTGAAAATGTTATGCTGCACAAAGGTTAACGAAGGGGAACAAATTTTGGTATCGAAAACCTGTACTAATTTTTTTTGGTT
GAATCCTGTCTTTTTTAAGTATGAACCATTCTGATCTAGAATCAGATTTGATCAACTGGACCATAATTCATACTAGCCAA
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49788.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis