Browse Element(s) Details


Os.26714.1.S1_at

Description gb:AK062223.1
DB_XREF= gi:32972241
TID=Os.26714.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B11, full insert sequence.
FL= gb:AK062223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g551309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55110Os.49788.1.S1_at10/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55110Os.49788.2.S1_x_at9/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55120Os.50909.2.S1_s_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55120Os.50909.1.S1_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55130Os.26714.1.S1_at9/113+31317009..31320400expressed protein
LOC_Os03g55140Os.54730.1.S1_at10/113+31321240..31326138transducin family protein, putative, expressed
LOC_Os03g55150Os.318.1.S1_at11/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55150Os.57450.1.S1_x_at1/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55164Os.2898.1.S1_at11/113+31330339..31337999WRKY DNA binding domain containing protein, expressed
LOC_Os03g55180OsAffx.13491.1.S1_at11/113+31338223..31341263expressed protein
LOC_Os03g55189Os.50619.1.S1_at1/113+31343187..31344256NA
LOC_Os03g55189Os.50619.1.S1_x_at1/113+31343187..31344256NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26714.1.S1_at--403--5511Chr03:31319949..31319973 (25 bp)
GAAAACCTCGCAAGAATCTGTCAGA
LOC_Os03g55130
Os.26714.1.S1_at--883--3251Chr03:31320087..31320111 (25 bp)
CAACGAGACGTTGTCGCAGACCGAG
LOC_Os03g55130
Os.26714.1.S1_at--571--10771Chr03:31320097..31320121 (25 bp)
TTGTCGCAGACCGAGGTGTCCATCA
LOC_Os03g55130
Os.26714.1.S1_at--932--7451Chr03:31320112..31320136 (25 bp)
GTGTCCATCAGGCTACAACATTTCT
LOC_Os03g55130
Os.26714.1.S1_at--968--2051Chr03:31320129..31320153 (25 bp)
ACATTTCTGCCGCATCTTGAAAAGA
LOC_Os03g55130
Os.26714.1.S1_at--307--9991Chr03:31320228..31320252 (25 bp)
TAGCCATGAGTGCACATACCTCGTT
LOC_Os03g55130
Os.26714.1.S1_at--11--2091Chr03:31320241..31320265 (25 bp)
ACATACCTCGTTGGCCTATTTGGGC
LOC_Os03g55130
Os.26714.1.S1_at--115--10851Chr03:31320260..31320284 (25 bp)
TTGGGCTCCCAACTTTCATGCTTTG
LOC_Os03g55130
Os.26714.1.S1_at--267--2211Chr03:31320350..31320374 (25 bp)
ACAACATTGTATTAAGCTGTTCCGA
LOC_Os03g55130
Os.26714.1.S1_at--862--7991Chr03:31320410..31320434 (25 bp)
GGATGTAACTCTGGCTGATATCTGA
NONE
Os.26714.1.S1_at--704--6051NONE
GAGATTCTAGCCGTATGAGTGTATA
NONE
Target Sequence 
GAAAACCTCGCAAGAATCTGTCAGAAACTATAGAGGAAGAAGAAGTCCCGNTTAGTCCACCAGCNAAACCGGATNCTGCA
AANCCAGATGCTGCGGAGATAGAAGCTAGTGATAGGGGGATCATTGGTTGGGGGCGAACAACGAGACGTTGTCGCAGACC
GAGGTGTCCATCAGGCTACAACATTTCTGCCGCATCTTGAAAAGATGCCGACAGAAAACATCGGAATATATTTGGATTTG
TAGTAGAGATCTTGATGGAGTGGTATAAGAAGGTAAGTATAGCCATGAGTGCACATACCTCGTTGGCCTATTTGGGCTCC
CAACTTTCATGCTTTGGGGTTGAGACATGGTGTACATTTTTAATAAGAAATTCTTAAATTAGTTCATAAGATATTTCTGC
AACAACATTGTATTAAGCTGTTCCGANGAAATATGGNATGATTCGTTATGAGAATTGCCAGGGATGTAACTCTGGCTGAT
ATCTGAANAAAAGCCTATGAAGAATGANGCAGCAAAATGGGTGTCAAATGAGATTCTAGCCGTATGAGTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis