Browse Element(s) Details


Os.57450.1.S1_x_at

Description gb:D10399.1
DB_XREF= gi:218082
TID=Os.57450.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57450 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for initiation factor eIF-4D (225 gene), partial sequence
DEF=Rice mRNA for initiation factor eIF-4D (225 gene), partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g322409/11Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g551501/11Eukaryotic translation initiation factor 5A-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32200OsAffx.31974.1.S1_at10/1112+19405991..19409288expressed protein
LOC_Os12g32210Os.53749.1.S1_at9/1112+19412646..19414959Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os12g32219NANA12+19421573..19422150NA
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
LOC_Os12g32240Os.10978.1.S1_at11/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32240Os.57450.1.S1_x_at9/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57450.1.S1_x_at--497--773Chr12:19434367..19434391 (25 bp)
ATGTCGGACTCCGAGGAGCACCACT
LOC_Os12g32240
Os.57450.1.S1_x_at--257--2771Chr12:19434421..19434445 (25 bp)
AAGACCTACCCGCAGCAGGCTGGGA
LOC_Os12g32240
Os.57450.1.S1_x_at--251--5011Chr12:19434435..19434459 (25 bp)
GCAGGCTGGGACCATCCGCAAAAAT
LOC_Os12g32240
Os.57450.1.S1_x_at--218--9891Chr12:19434463..19434487 (25 bp)
TACATAGTCATCAAGAACCGCCCCT
LOC_Os12g32240
Os.57450.1.S1_x_at--416--4191NONE
CCCTGCAAGGTTGTTGAGGTTTCAA
NONE
Os.57450.1.S1_x_at--539--4391Chr12:19435677..19435701 (25 bp)
GCCAAGTGCCACTTTGTTGCAATTG
LOC_Os12g32240
Os.57450.1.S1_x_at--249--6671Chr12:19435692..19435716 (25 bp)
GTTGCAATTGACATCTTTACTGCCA
LOC_Os12g32240
Os.57450.1.S1_x_at--1100--431Chr12:19435704..19435728 (25 bp)
ATCTTTACTGCCAAGAAGCTCGAAG
LOC_Os12g32240
Os.57450.1.S1_x_at--299--5411Chr12:19435718..19435742 (25 bp)
GAAGCTCGAAGATATTGTGCCATCT
LOC_Os12g32240
Os.57450.1.S1_x_at--1059--8691Chr12:19435733..19435757 (25 bp)
TGTGCCATCTTCTCACAACTGTGAT
LOC_Os12g32240
Os.57450.1.S1_x_at--730--6091NONE
GAGTCTTGTTAACTTGAAAATGGGC
NONE
Target Sequence 
ATGTCGGACTCCGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGCGCCTCCAAGACCTACCCGCAGCAGGCTGGGAC
CATCCGCAAAAATGGCTACATAGTCATCAAGAACCGCCCCTGCAAGGTTGTTGAGGTTTCAACCTCNANNNNNNNNNAGC
ACGGTCACGCCAAGTGCCACTTTGTTGCAATTGACATCTTTACTGCCAAGAAGCTCGAAGATATTGTGCCATCTTCTCAC
AACTGTGATGTNCCGCATGTGAACCGTACGGAGTACCNAGCTCATTGATATATCTGANGGATGGNATTTNTGAGTCTTGT
TAACTTGAAAATGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57450.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis