Browse Element(s) Details


Os.15807.1.S1_s_at

Description gb:AU033243
DB_XREF= gi:3769216
DB_XREF=AU033243
CLONE=S5757_1A
TID=Os.15807.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15807 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3226011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
LOC_Os12g32240Os.10978.1.S1_at11/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32240Os.57450.1.S1_x_at9/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein
LOC_Os12g32280OsAffx.7765.1.S1_at4/1112+19463053..19464159SWIB/MDM2 domain containing protein, expressed
LOC_Os12g32290OsAffx.31976.1.S1_at11/1112+19466662..19467473expressed protein
LOC_Os12g32290OsAffx.31976.1.S1_s_at11/1112+19466662..19467473expressed protein
LOC_Os12g32300OsAffx.31977.1.S1_at11/1112+19472219..19472560hypothetical protein
LOC_Os12g32310OsAffx.7766.1.S1_at10/1112+19473878..19475306hypothetical protein
LOC_Os12g32320NANA12+19476984..19482240expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15807.1.S1_s_at--968--10071Chr12:19452811..19452835 (25 bp)
TAGGGCCTAGAGCACATCTCTTGAT
LOC_Os12g32260
Os.15807.1.S1_s_at--748--3711Chr12:19452805..19452829 (25 bp)
CTAGAGCACATCTCTTGATGATGAT
LOC_Os12g32260
Os.15807.1.S1_s_at--495--4751Chr12:19452771..19452795 (25 bp)
GCTGATGCTCATTGATCTCTATATA
LOC_Os12g32260
Os.15807.1.S1_s_at--952--7671Chr12:19452736..19452760 (25 bp)
GGGTTTTGGTTTATATCATTTTGAT
LOC_Os12g32260
Os.15807.1.S1_s_at--173--3431Chr12:19452664..19452688 (25 bp)
CAGAGATGCTGTTAGTGTTTAGGGA
LOC_Os12g32260
Os.15807.1.S1_s_at--34--6811Chr12:19452648..19452672 (25 bp)
GTTTAGGGAGAGCATCAGGTCCATC
LOC_Os12g32260
Os.15807.1.S1_s_at--399--1071Chr12:19452644..19452668 (25 bp)
AGGGAGAGCATCAGGTCCATCAGAT
LOC_Os12g32260
Os.15807.1.S1_s_at--123--4971Chr12:19452637..19452661 (25 bp)
GCATCAGGTCCATCAGATGGCAGAG
LOC_Os12g32260
Os.15807.1.S1_s_at--764--7691Chr12:19452611..19452635 (25 bp)
GGGTCAACATGTAATTAATTGGGTT
LOC_Os12g32260
Os.15807.1.S1_s_at--99--7651Chr12:19452591..19452615 (25 bp)
GGGTTAGTAAGGTCTATAGCAACAT
LOC_Os12g32260
Os.15807.1.S1_s_at--119--2891Chr12:19452583..19452607 (25 bp)
AAGGTCTATAGCAACATTTAGTGCC
LOC_Os12g32260
Target Sequence 
TAGGGCCTAGAGCACATCTCTTGATGATGATGATGATAATGCTGATGCTCATTGATCTCTATATAATTTTTTTTTGGGTT
TTGGTTTATATCATTTTGATTCATCTTGTTAATTAATTAATTAAGGGTTAATTTCTGGTCCTGGGGGCAGAGATGCTGTT
AGTGTTTAGGGAGAGCATCAGGTCCATCAGATGGCAGAGGGGGTCAACATGTAATTAATTGGGTTAGTAAGGTCTATAGC
AACATTTAGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15807.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis