Browse Element(s) Details


OsAffx.31975.1.S1_at

Description tigr:9640.m03133
TID=OsAffx.31975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3226011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
LOC_Os12g32240Os.10978.1.S1_at11/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32240Os.57450.1.S1_x_at9/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein
LOC_Os12g32280OsAffx.7765.1.S1_at4/1112+19463053..19464159SWIB/MDM2 domain containing protein, expressed
LOC_Os12g32290OsAffx.31976.1.S1_at11/1112+19466662..19467473expressed protein
LOC_Os12g32290OsAffx.31976.1.S1_s_at11/1112+19466662..19467473expressed protein
LOC_Os12g32300OsAffx.31977.1.S1_at11/1112+19472219..19472560hypothetical protein
LOC_Os12g32310OsAffx.7766.1.S1_at10/1112+19473878..19475306hypothetical protein
LOC_Os12g32320NANA12+19476984..19482240expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31975.1.S1_at--1085--9371Chr12:19453051..19453075 (25 bp)
TCGAGGGCCTCTTCCAGCTCAGGAT
LOC_Os12g32260
OsAffx.31975.1.S1_at--574--9211Chr12:19453039..19453063 (25 bp)
TCCAGCTCAGGATCGCCAGGCCGTA
LOC_Os12g32260
OsAffx.31975.1.S1_at--609--1771Chr12:19453007..19453031 (25 bp)
ACCGGCGAGCTGACCTCATCAATGG
LOC_Os12g32260
OsAffx.31975.1.S1_at--249--3571Chr12:19452991..19453015 (25 bp)
CATCAATGGTTTGTGAGGGCTTCTT
LOC_Os12g32260
OsAffx.31975.1.S1_at--406--7391Chr12:19452979..19453003 (25 bp)
GTGAGGGCTTCTTGATTGCATACAT
LOC_Os12g32260
OsAffx.31975.1.S1_at--470--7591Chr12:19452975..19452999 (25 bp)
GGGCTTCTTGATTGCATACATCTAC
LOC_Os12g32260
OsAffx.31975.1.S1_at--490--6591Chr12:19452966..19452990 (25 bp)
GATTGCATACATCTACTCCATCATC
LOC_Os12g32260
OsAffx.31975.1.S1_at--875--331Chr12:19452960..19452984 (25 bp)
ATACATCTACTCCATCATCTGTGTT
LOC_Os12g32260
OsAffx.31975.1.S1_at--333--491Chr12:19452944..19452968 (25 bp)
ATCTGTGTTCTTGACACTGTCATCA
LOC_Os12g32260
OsAffx.31975.1.S1_at--621--8791Chr12:19452939..19452963 (25 bp)
TGTTCTTGACACTGTCATCACTTGC
LOC_Os12g32260
OsAffx.31975.1.S1_at--1011--7651Chr12:19452853..19452877 (25 bp)
GGGATTTAGCAGCATAAATTTTTCT
LOC_Os12g32260
Target Sequence 
TCGAGGGCCTCTTCCAGCTCAGGATCGCCAGGCCGTACGCCGTCACCGGCGAGCTGACCTCATCAATGGTTTGTGAGGGC
TTCTTGATTGCATACATCTACTCCATCATCTGTGTTCTTGACACTGTCATCACTTGCATGGTGTACCAAACCTGCAAGAT
GAGCCATTCTTGTGATCTCTTGGAGCTTGAGGAGAAAGGGGATTTAGCAGCATAAATTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis