Browse Element(s) Details


Os.17759.1.A1_s_at

Description gb:BI813534
DB_XREF= gi:16579439
DB_XREF=K013A07
CLONE=K013A07
TID=Os.17759.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17759 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3225011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32219NANA12+19421573..19422150NA
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
LOC_Os12g32240Os.10978.1.S1_at11/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32240Os.57450.1.S1_x_at9/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein
LOC_Os12g32280OsAffx.7765.1.S1_at4/1112+19463053..19464159SWIB/MDM2 domain containing protein, expressed
LOC_Os12g32290OsAffx.31976.1.S1_at11/1112+19466662..19467473expressed protein
LOC_Os12g32290OsAffx.31976.1.S1_s_at11/1112+19466662..19467473expressed protein
LOC_Os12g32300OsAffx.31977.1.S1_at11/1112+19472219..19472560hypothetical protein
LOC_Os12g32310OsAffx.7766.1.S1_at10/1112+19473878..19475306hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17759.1.A1_s_at--25--3251Chr12:19449525..19449549 (25 bp)
CAAGCTTCACTTACAATGGCAGACT
LOC_Os12g32250
Os.17759.1.A1_s_at--491--851Chr12:19449540..19449564 (25 bp)
ATGGCAGACTTCAACAACATTAACC
LOC_Os12g32250
Os.17759.1.A1_s_at--84--2671Chr12:19449593..19449617 (25 bp)
AAGCGAAGAATAACACCGTCAACTG
LOC_Os12g32250
Os.17759.1.A1_s_at--605--2471Chr12:19449604..19449628 (25 bp)
AACACCGTCAACTGACTTTCTTGGG
LOC_Os12g32250
Os.17759.1.A1_s_at--497--9711Chr12:19449611..19449635 (25 bp)
TCAACTGACTTTCTTGGGACCCCGG
LOC_Os12g32250
Os.17759.1.A1_s_at--147--7991Chr12:19449685..19449709 (25 bp)
GGATGCCTGCAATTCTAATAGTCAC
LOC_Os12g32250
Os.17759.1.A1_s_at--503--3131Chr12:19449756..19449780 (25 bp)
AATTTTCCTACCGATACACAGAATT
LOC_Os12g32250
Os.17759.1.A1_s_at--45--151Chr12:19449778..19449802 (25 bp)
ATTACTGAAACGACACCTAGCCTTT
LOC_Os12g32250
Os.17759.1.A1_s_at--807--3351Chr12:19449791..19449815 (25 bp)
CACCTAGCCTTTCTAGCTTGTACAT
LOC_Os12g32250
Os.17759.1.A1_s_at--906--2371Chr12:19449834..19449858 (25 bp)
AAACTCAATATAACACCAGCTAGGT
LOC_Os12g32250
Os.17759.1.A1_s_at--999--1111Chr12:19449954..19449978 (25 bp)
AGTGAAATGTACAGATGCTTTCCCG
LOC_Os12g32250
Target Sequence 
CAAGCTTCACTTACAATGGCAGACTTCAACAACATTAACCAGAGNCCAATTGGGGTCTTACAGTTCAAAAGCGAAGAATA
ACACCGTCAACTGACTTTCTTGGGACCCCGGTTGNCTGAAGTNGCACANCTGGTATTTNGTTGATTTCTTCANGCAAATA
TTGGATGCCTGCAATTCTAATAGTCACACTGTTCCNAACGTTCAAGAAGTAATACAACAATATCATTGTCTNCAATTTTC
CTACCGATACACAGAATTACTGAAACGACACCTAGCCTTTCTAGCTTGTACATNCTGTTACTTTGAAGCATAAACTCAAT
ATAACACCAGCTAGGTGGATGTNCAGATGGACGGGTCGTAATCANATACATGTTTACTTTGTAATTTGTTTATCAATCAA
GCTCCTGCNTTGTAATAAGATTGAATAGAGAAGTGAAATGTACAGATGCTTTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17759.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis