Browse Element(s) Details


Os.26913.1.S1_at

Description gb:AK065402.1
DB_XREF= gi:32975420
TID=Os.26913.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013009O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013009O17, full insert sequence.
FL= gb:AK065402.1 gb:AK119769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3223010/11Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32180Os.49374.1.S1_at11/1112+19396282..19399917Cornichon protein, expressed
LOC_Os12g32190Os.50052.2.S1_at10/1112+19400549..19402236expressed protein
LOC_Os12g32200OsAffx.31974.1.S1_at10/1112+19405991..19409288expressed protein
LOC_Os12g32210Os.53749.1.S1_at9/1112+19412646..19414959Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os12g32219NANA12+19421573..19422150NA
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
LOC_Os12g32240Os.10978.1.S1_at11/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32240Os.57450.1.S1_x_at9/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006777biological_processMo-molybdopterin cofactor biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26913.1.S1_at--366--3611Chr12:19425539..19425559 (21 bp)
CTTGTTTGGCCCGTCTGAGGTGAGC
LOC_Os12g32230
Os.26913.1.S1_at--540--10231NONE
TTTGGCCCGTCTGAGGTGAGCTTGA
NONE
Os.26913.1.S1_at--1118--8471Chr12:19427759..19427783 (25 bp)
TGGCTCCTCCGTACGACGACTGTGA
LOC_Os12g32230
Os.26913.1.S1_at--449--5791Chr12:19427773..19427797 (25 bp)
GACGACTGTGACGAACTATCAACAT
LOC_Os12g32230
Os.26913.1.S1_at--932--6951Chr12:19427923..19427947 (25 bp)
GTAGCAGTTGCAAACCTCAGGCAGT
LOC_Os12g32230
Os.26913.1.S1_at--39--6671Chr12:19427929..19427953 (25 bp)
GTTGCAAACCTCAGGCAGTTGAAAG
LOC_Os12g32230
Os.26913.1.S1_at--873--6651Chr12:19427953..19427977 (25 bp)
GTTGAAGCATATCTGTACTTTTCGC
LOC_Os12g32230
Os.26913.1.S1_at--1031--2791Chr12:19427991..19428015 (25 bp)
AAGATGTATCTGTTGTATGATGTAA
LOC_Os12g32230
Os.26913.1.S1_at--125--6971Chr12:19428059..19428083 (25 bp)
GTAGCTAACTATTCTTTTGTGGCAT
LOC_Os12g32230
Os.26913.1.S1_at--548--10391Chr12:19428073..19428097 (25 bp)
TTTTGTGGCATCTTACCGGTTAATA
LOC_Os12g32230
Os.26913.1.S1_at--73--8651Chr12:19428076..19428100 (25 bp)
TGTGGCATCTTACCGGTTAATAAAA
LOC_Os12g32230
Target Sequence 
CTTGTTTGGCCCGTCTGAGGTGAGCTTGAGAGAGCCTATCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAA
GCGCTGCGGTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACAGCAAATAGACCTATGATTCAC
ATTGGTGGCTGAGATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCGTACGACGACTGTGACGAACTATCAACATGA
TAAAAAAACAAAACAAAGATTTACATGATCTTACCTTGATATGATGGTAAAGTGAGGAACTCAAAACTTCAAAGGGCAAT
ACATACAGTTTGTTCAAGATATAAAAATGTTACTTGTGAAATAGTAGCAGTTGCAAACCTCAGGCAGTTGAAAGTTGAAG
CATATCTGTACTTTTCGCTACTTGTACGAGAAAGATGTATCTGTTGTATGATGTAATGATGTAATGATGTATGCTCCTCA
TAAATCATAATGCTAATGTGTAGCTAACTATTCTTTTGTGGCATCTTACCGGTTAATAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis