Browse Element(s) Details


Os.49374.1.S1_at

Description gb:AK060944.1
DB_XREF= gi:32970962
TID=Os.49374.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-E03, full insert sequence.
FL= gb:AK060944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3218011/11Cornichon protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32160OsAffx.19928.1.S1_at10/1112+19376658..19379532hypothetical protein
LOC_Os12g32170NANA12+19385421..19386206hypothetical protein
LOC_Os12g32180Os.49374.1.S1_at11/1112+19396282..19399917Cornichon protein, expressed
LOC_Os12g32190Os.50052.2.S1_at10/1112+19400549..19402236expressed protein
LOC_Os12g32200OsAffx.31974.1.S1_at10/1112+19405991..19409288expressed protein
LOC_Os12g32210Os.53749.1.S1_at9/1112+19412646..19414959Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os12g32219NANA12+19421573..19422150NA
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49374.1.S1_at--651--6031Chr12:19398450..19398474 (25 bp)
GAGATATTCCGGCAACTCAATTGGG
LOC_Os12g32180
Os.49374.1.S1_at--272--7991Chr12:19398487..19398511 (25 bp)
GGATGATCAAGCTTGCATTCTACTT
LOC_Os12g32180
Os.49374.1.S1_at--126--6411Chr12:19399352..19399371 (20 bp)
GATCTACAGGCTTGTGATGACGGCT
LOC_Os12g32180
Os.49374.1.S1_at--482--6311Chr12:19399362..19399386 (25 bp)
GATGACGGCTGTGACGTTATTCATT
LOC_Os12g32180
Os.49374.1.S1_at--723--10271Chr12:19399428..19399452 (25 bp)
TTTGCTACCAACTTTTCACACACAG
LOC_Os12g32180
Os.49374.1.S1_at--137--2711Chr12:19399580..19399604 (25 bp)
AAGCTTGTGGTGTGCATCATTGAAC
LOC_Os12g32180
Os.49374.1.S1_at--897--2471Chr12:19399613..19399637 (25 bp)
AACACTGCCAGCCTCTGAGAGAAGA
LOC_Os12g32180
Os.49374.1.S1_at--917--1471Chr12:19399635..19399659 (25 bp)
AGAATTCAGTACATCGCTCTGGCTT
LOC_Os12g32180
Os.49374.1.S1_at--629--2311Chr12:19399666..19399690 (25 bp)
AAAGAAGATTCAACTCCCTAGCCGG
LOC_Os12g32180
Os.49374.1.S1_at--166--5251Chr12:19399697..19399721 (25 bp)
GAATCTAGCATCTCAGCATTATCAT
LOC_Os12g32180
Os.49374.1.S1_at--721--3071Chr12:19399834..19399858 (25 bp)
AATCACTGATTCATACCTGCATCCA
LOC_Os12g32180
Target Sequence 
GAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAAGCTTGCATTCTACTTTAGTTTGTTTATTATAAC
GATCTACAGGCTTGTGATGACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGA
GTTTGCTACCAACTTTTCACACACAGATGGCTAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCAT
TGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGAGAAAGAAGATTCAAC
TCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAA
TGTAGTTTTATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCAC
TGATTCATACCTGCATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis