Browse Element(s) Details


OsAffx.19928.1.S1_at

Description tigr:9640.m03122
TID=OsAffx.19928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3216010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32130NANA12+19352923..19353761Trehalose-phosphatase family protein
LOC_Os12g32140OsAffx.14528.2.S1_x_at11/1112+19355392..19358524transposon protein, putative, unclassified
LOC_Os12g32140OsAffx.14528.3.S1_x_at4/1112+19355392..19358524transposon protein, putative, unclassified
LOC_Os12g32140OsAffx.14528.1.S1_x_at4/1112+19355392..19358524transposon protein, putative, unclassified
LOC_Os12g32140OsAffx.14528.3.S1_at3/1112+19355392..19358524transposon protein, putative, unclassified
LOC_Os12g32150NANA12+19363430..19364200hypothetical protein
LOC_Os12g32160OsAffx.19928.1.S1_at10/1112+19376658..19379532hypothetical protein
LOC_Os12g32170NANA12+19385421..19386206hypothetical protein
LOC_Os12g32180Os.49374.1.S1_at11/1112+19396282..19399917Cornichon protein, expressed
LOC_Os12g32190Os.50052.2.S1_at10/1112+19400549..19402236expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19928.1.S1_at--195--1531Chr12:19378045..19378069 (25 bp)
AGCAGATCGCCGCTCAGATTGTCGC
LOC_Os12g32160
OsAffx.19928.1.S1_at--484--7231NONE
GTCGCCGTGGCGTCTCGAAATTGGA
NONE
OsAffx.19928.1.S1_at--25--2251Chr12:19377121..19377145 (25 bp)
AAATTGGAGCCCATCGCTTGTGGGT
LOC_Os12g32160
OsAffx.19928.1.S1_at--1079--4071Chr12:19377087..19377111 (25 bp)
CGAGCTACATGATGCCGCCATAGAA
LOC_Os12g32160
OsAffx.19928.1.S1_at--754--1231Chr12:19376968..19376992 (25 bp)
AGATTGCCGTCCAGATCGTGGCCAT
LOC_Os12g32160
OsAffx.19928.1.S1_at--775--8611Chr12:19376932..19376956 (25 bp)
TGGTGACCAACCACAAGAGCCTTGC
LOC_Os12g32160
OsAffx.19928.1.S1_at--1018--10691Chr12:19376911..19376935 (25 bp)
TTGCCTGCGCTGTCGCCGTGTTAAA
LOC_Os12g32160
OsAffx.19928.1.S1_at--826--31Chr12:19376829..19376853 (25 bp)
ATTGGGCAGGATGGTGCCGTCCTTC
LOC_Os12g32160
OsAffx.19928.1.S1_at--1099--8531Chr12:19376792..19376816 (25 bp)
TGGAGCCTCATGGTGGCCAAGCAAC
LOC_Os12g32160
OsAffx.19928.1.S1_at--477--7551Chr12:19376780..19376804 (25 bp)
GTGGCCAAGCAACGCGACGAGTACT
LOC_Os12g32160
OsAffx.19928.1.S1_at--460--6091Chr12:19376762..19376786 (25 bp)
GAGTACTCCGTGGATGCCGCGGTCA
LOC_Os12g32160
Target Sequence 
AGCAGATCGCCGCTCAGATTGTCGCCGTGGCGTCTCGAAATTGGAGCCCATCGCTTGTGGGTGAAGCGCATCGAGCTACA
TGATGCCGCCATAGAAGAGGTGACGTTGGTCAACAACGTCATCACCGACCTCCACCTCGCCTTCGAAGCCAAAAGGGCCC
AGCTGGCTGCCTCGCAGCTCGCCAAACGGCAGATTGCCGTCCAGATCGTGGCCATGGTGTGCACCCTGGTGACCAACCAC
AAGAGCCTTGCCTGCGCTGTCGCCGTGTTAAACTCGCTGCTCCCGCGGCTCGAGCGTGCGCACGAGAGGGAGGCCGAGCT
TGAGATGGCATTGGGCAGGATGGTGCCGTCCTTCCTCGCCCTCAACTGGAGCCTCATGGTGGCCAAGCAACGCGACGAGT
ACTCCGTGGATGCCGCGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis