Browse Element(s) Details


Os.318.1.S1_at

Description gb:AK060387.1
DB_XREF= gi:32970405
TID=Os.318.1
CNT=117
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.318 (NCBI UniGene Cluster)
UG_TITLE=MRNA for translation initiation factor eIF-5A
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-G06, full insert sequence.
FL= gb:AK060387.1 gb:AK121592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5515011/11Eukaryotic translation initiation factor 5A-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55130Os.26714.1.S1_at9/113+31317009..31320400expressed protein
LOC_Os03g55140Os.54730.1.S1_at10/113+31321240..31326138transducin family protein, putative, expressed
LOC_Os03g55150Os.318.1.S1_at11/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55150Os.57450.1.S1_x_at1/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55164Os.2898.1.S1_at11/113+31330339..31337999WRKY DNA binding domain containing protein, expressed
LOC_Os03g55180OsAffx.13491.1.S1_at11/113+31338223..31341263expressed protein
LOC_Os03g55189Os.50619.1.S1_at1/113+31343187..31344256NA
LOC_Os03g55189Os.50619.1.S1_x_at1/113+31343187..31344256NA
LOC_Os03g55200Os.51697.1.S1_at11/113+31349833..31352265origin recognition complex subunit 5, putative, expressed
LOC_Os03g55210OsAffx.25717.1.S1_at11/113+31353463..31356366protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.318.1.S1_at--209--7951Chr03:31328895..31329203 (25 bp)
GGATTTGTCAGCCTCCTGACTGAAA
LOC_Os03g55150
Os.318.1.S1_at--876--9771Chr03:31329214..31329238 (25 bp)
TAAGGATGACCTGAGGCTCCCTAGT
LOC_Os03g55150
Os.318.1.S1_at--92--6311Chr03:31329239..31329259 (21 bp)
GATGAGGCTCTGCTTACTCAGATCA
LOC_Os03g55150
Os.318.1.S1_at--988--4571Chr03:31329424..31329448 (25 bp)
GCGCTCTGAAGGATATTGGCCCCAA
LOC_Os03g55150
Os.318.1.S1_at--1033--5211Chr03:31329455..31329479 (25 bp)
GAATACCTTGTTACCGTGTTTGGCT
LOC_Os03g55150
Os.318.1.S1_at--577--9971Chr03:31329479..31329503 (25 bp)
TACCTGTCTGGTCGCTTTAAGTTTG
LOC_Os03g55150
Os.318.1.S1_at--182--6651Chr03:31329568..31329592 (25 bp)
GTTGTTCCATCTTGCGGTTTATACC
LOC_Os03g55150
Os.318.1.S1_at--52--6531Chr03:31329597..31329621 (25 bp)
GATTTGGATGTACCTTTGCTATATG
LOC_Os03g55150
Os.318.1.S1_at--628--7071Chr03:31329704..31329728 (25 bp)
GTAATCCATCCTATATTCTGTTGCA
LOC_Os03g55150
Os.318.1.S1_at--183--10831Chr03:31329736..31329760 (25 bp)
TTGGGTGCTCTTTGACTTAGTCGAA
LOC_Os03g55150
Os.318.1.S1_at--1130--7391Chr03:31329761..31329785 (25 bp)
GTGATCCTCTTGACTTCTTACGTAT
LOC_Os03g55150
Target Sequence 
GGATTTGTCAGCCTCCTGACTGAAAGTGGAGGCACTAAGGATGACCTGAGGCTCCCTAGTGATGAGGCTCTGCTTACTCA
GATCAAGGATGGATTCGCCGAGGGGAAGGATCTGATTGTTACCGTGATGTCTGCCATGGGTGAGGAGCAGATCTGCGCTC
TGAAGGATATTGGCCCCAAGAACTAGAATACCTTGTTACCGTGTTTGGCTACCTGTCTGGTCGCTTTAAGTTTGGAGCTG
GTCTTGAGATTATATATAAACTTTTGATTTGAGCGTAAGTTAAGAAGACATATGGGCCGTTGTTCCATCTTGCGGTTTAT
ACCGAATGATTTGGATGTACCTTTGCTATATGTAATGCTATTTTGAACCAGTAGTTTTACAGTCTTTATGGTTATTTATA
TACAATGTTCTTTGGGTTATATGCANAAATTTCTTGTAATCCATCCTATATTCTGTTGCATCATTTTTTGGGTGCTCTTT
GACTTAGTCGAAGTGATCCTCTTGACTTCTTACGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis