Browse Element(s) Details


OsAffx.25717.1.S1_at

Description tigr:9631.m05382
TID=OsAffx.25717.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5521011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55150Os.318.1.S1_at11/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55150Os.57450.1.S1_x_at1/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55164Os.2898.1.S1_at11/113+31330339..31337999WRKY DNA binding domain containing protein, expressed
LOC_Os03g55180OsAffx.13491.1.S1_at11/113+31338223..31341263expressed protein
LOC_Os03g55189Os.50619.1.S1_at1/113+31343187..31344256NA
LOC_Os03g55189Os.50619.1.S1_x_at1/113+31343187..31344256NA
LOC_Os03g55200Os.51697.1.S1_at11/113+31349833..31352265origin recognition complex subunit 5, putative, expressed
LOC_Os03g55210OsAffx.25717.1.S1_at11/113+31353463..31356366protein kinase family protein, putative, expressed
LOC_Os03g55220Os.51847.1.S1_x_at11/113+31360998..31365561Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55230Os.31504.1.S1_at11/113+31375286..31376903Cytochrome P450 81E1, putative, expressed
LOC_Os03g55240Os.11193.1.S1_at10/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55240Os.51328.1.S1_at2/113+31379697..31385021Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25717.1.S1_at--394--5131Chr03:31353934..31353958 (25 bp)
GCAAACTCATGTCAGCACAGCTGTC
LOC_Os03g55210
OsAffx.25717.1.S1_at--1111--9131Chr03:31353886..31353910 (25 bp)
TCCAGAGTACTTCAGACGTCAACAG
LOC_Os03g55210
OsAffx.25717.1.S1_at--513--2811Chr03:31353852..31353876 (25 bp)
AAGTCTGACGTATACTCTTTCGGAG
LOC_Os03g55210
OsAffx.25717.1.S1_at--631--2771Chr03:31353775..31353799 (25 bp)
AAGAGACCAGGTGAACCTTGCCGAA
LOC_Os03g55210
OsAffx.25717.1.S1_at--200--2871Chr03:31353752..31353776 (25 bp)
AATGGGCCCGTACATGGCACCGCAA
LOC_Os03g55210
OsAffx.25717.1.S1_at--11--10791Chr03:31353707..31353731 (25 bp)
TTGATCCCCACATTTCAGGGCAAAT
LOC_Os03g55210
OsAffx.25717.1.S1_at--929--8231Chr03:31353689..31353713 (25 bp)
GGCAAATCCGTCCTGATTCACTTGA
LOC_Os03g55210
OsAffx.25717.1.S1_at--38--9111Chr03:31353658..31353682 (25 bp)
TGCTGAGGCCGCTGAGAAATGTCTT
LOC_Os03g55210
OsAffx.25717.1.S1_at--477--2991Chr03:31353641..31353665 (25 bp)
AATGTCTTGCTGACTACGGTGTCGA
LOC_Os03g55210
OsAffx.25717.1.S1_at--452--9391Chr03:31353620..31353644 (25 bp)
TCGATCGCCCGTCAATGGGTGATGT
LOC_Os03g55210
OsAffx.25717.1.S1_at--932--8511Chr03:31353591..31353615 (25 bp)
TGGAAACTCGAATTTGCCTTGCAAC
LOC_Os03g55210
Target Sequence 
GCAAACTCATGTCAGCACAGCTGTCAAAGGAAGTTTTGGATATCTTGATCCAGAGTACTTCAGACGTCAACAGCTGACAG
AGAAGTCTGACGTATACTCTTTCGGAGTGGTACTCTTTGAAGTATTGTGTGCAAGGCCAGCCATCAATCCAACACTTCCA
AGAGACCAGGTGAACCTTGCCGAATGGGCCCGTACATGGCACCGCAAGGGAGAGCTGAATAAAATAATTGATCCCCACAT
TTCAGGGCAAATCCGTCCTGATTCACTTGAAATATTTGCTGAGGCCGCTGAGAAATGTCTTGCTGACTACGGTGTCGATC
GCCCGTCAATGGGTGATGTGTTATGGAAACTCGAATTTGCCTTGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis