Browse Element(s) Details


Os.31504.1.S1_at

Description gb:AK107231.1
DB_XREF= gi:32992440
TID=Os.31504.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E04, full insert sequence.
FL= gb:AK107231.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5523011/11Cytochrome P450 81E1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55200Os.51697.1.S1_at11/113+31349833..31352265origin recognition complex subunit 5, putative, expressed
LOC_Os03g55210OsAffx.25717.1.S1_at11/113+31353463..31356366protein kinase family protein, putative, expressed
LOC_Os03g55220Os.51847.1.S1_x_at11/113+31360998..31365561Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55230Os.31504.1.S1_at11/113+31375286..31376903Cytochrome P450 81E1, putative, expressed
LOC_Os03g55240Os.11193.1.S1_at10/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55240Os.51328.1.S1_at2/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55250Os.27225.1.S1_at11/113+31387566..31388756Cytochrome P450 81E1, putative, expressed
LOC_Os03g55260Os.10430.1.S1_at11/113+31392494..31394611Cytochrome P450 family protein, expressed
LOC_Os03g55270Os.10385.1.S1_at11/113+31394612..31397826TIP41-like family protein, expressed
LOC_Os03g55280Os.10389.1.S1_at11/113+31399385..31402519aspartate-semialdehyde dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31504.1.S1_at--1018--3591Chr03:31376326..31376350 (25 bp)
CTTGACGGTCAATCGGGAGAAAGCT
LOC_Os03g55230
Os.31504.1.S1_at--596--9811Chr03:31376357..31376381 (25 bp)
TAAATTAGGCACAGCGGGTAACGCG
LOC_Os03g55230
Os.31504.1.S1_at--334--1611Chr03:31376369..31376393 (25 bp)
AGCGGGTAACGCGAGAAGCGCCCCA
LOC_Os03g55230
Os.31504.1.S1_at--535--5971Chr03:31376381..31376405 (25 bp)
GAGAAGCGCCCCAGCCCGGGTTTGA
LOC_Os03g55230
Os.31504.1.S1_at--876--5216Chr05:22164452..22164947 (25 bp)
GAATTTTAACTCGTATGTTTGCGAA
NONE
Os.31504.1.S1_at--49--2071Chr03:31376754..31376778 (25 bp)
ACTTCCATTTTATGTGCCTGCCTAT
LOC_Os03g55230
Os.31504.1.S1_at--962--771Chr03:31376765..31376789 (25 bp)
ATGTGCCTGCCTATTGAAGTATTGA
LOC_Os03g55230
Os.31504.1.S1_at--186--6591Chr03:31376788..31376812 (25 bp)
GATTGCCATAATCTATACCTGCCTA
LOC_Os03g55230
Os.31504.1.S1_at--248--451Chr03:31376798..31376822 (25 bp)
ATCTATACCTGCCTATCTTTTCTAT
LOC_Os03g55230
Os.31504.1.S1_at--831--4451Chr03:31376808..31376832 (25 bp)
GCCTATCTTTTCTATGCAATCCTGG
LOC_Os03g55230
Os.31504.1.S1_at--1120--3031Chr03:31376825..31376849 (25 bp)
AATCCTGGATATAGTACTGGTGCAC
LOC_Os03g55230
Target Sequence 
CTTGACGGTCAATCGGGAGAAAGCTAAACAGTAAATTAGGCACAGCGGGTAACGCGAGAAGCGCCCCAGCCCGGGTTTGA
AGAGGTTTTATCTGGAAAAATCAATTCAACCTTTAAGAGTATTTTTTTTATGTCACTTAAAAGTTTATAAAAAAATTAAA
TAAATTTAGTAAGATAGATCTATATGTGATATGTCACTTCACAAACATATAAATTCAAATTCAACTTATAAGTAGAAAAA
AATAAATTTAACTATCAATAGAACTTATAATTCACGGTCAAATTTATTTTTTTTTTCAAATTGAATAAGTTGAATTTTAA
CTCGTATGTTTGCGAAAAGATATATCATATATTGATCTATCTTGATATTTTTTTAATTTTTTTAACGACATGAAAAAAAA
CAGGATGTTCCCTAGAGGGAAAAAATCCACTTCCATTTTATGTGCCTGCCTATTGAAGTATTGATTGCCATAATCTATAC
CTGCCTATCTTTTCTATGCAATCCTGGATATAGTACTGGTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis