Browse Element(s) Details


Os.51847.1.S1_x_at

Description gb:AK072833.1
DB_XREF= gi:32982856
TID=Os.51847.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136C11, full insert sequence.
FL= gb:AK072833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5522011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55164Os.2898.1.S1_at11/113+31330339..31337999WRKY DNA binding domain containing protein, expressed
LOC_Os03g55180OsAffx.13491.1.S1_at11/113+31338223..31341263expressed protein
LOC_Os03g55189Os.50619.1.S1_at1/113+31343187..31344256NA
LOC_Os03g55189Os.50619.1.S1_x_at1/113+31343187..31344256NA
LOC_Os03g55200Os.51697.1.S1_at11/113+31349833..31352265origin recognition complex subunit 5, putative, expressed
LOC_Os03g55210OsAffx.25717.1.S1_at11/113+31353463..31356366protein kinase family protein, putative, expressed
LOC_Os03g55220Os.51847.1.S1_x_at11/113+31360998..31365561Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g55230Os.31504.1.S1_at11/113+31375286..31376903Cytochrome P450 81E1, putative, expressed
LOC_Os03g55240Os.11193.1.S1_at10/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55240Os.51328.1.S1_at2/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55250Os.27225.1.S1_at11/113+31387566..31388756Cytochrome P450 81E1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51847.1.S1_x_at--127--51Chr03:31365237..31365261 (25 bp)
ATTGCTGCGTGCTGATCGTCCAGGG
LOC_Os03g55220
Os.51847.1.S1_x_at--1124--1071Chr03:31365258..31365282 (25 bp)
AGGGCAGCAGCTGGCCTAATCTGAT
LOC_Os03g55220
Os.51847.1.S1_x_at--416--3871Chr03:31365278..31365302 (25 bp)
CTGATGACTGCCATATACTCTACTC
LOC_Os03g55220
Os.51847.1.S1_x_at--839--231Chr03:31365290..31365314 (25 bp)
ATATACTCTACTCTACTCCACTTTC
LOC_Os03g55220
Os.51847.1.S1_x_at--366--3671Chr03:31365310..31365334 (25 bp)
CTTTCTTCACAGCTGCAGGGTTTTA
LOC_Os03g55220
Os.51847.1.S1_x_at--512--6812Chr03:31365329..31365353 (25 bp)
GTTTTAGAACTAAGCCAGATCTTTT
LOC_Os03g55220
Os.51847.1.S1_x_at--918--5691Chr03:31365379..31365403 (25 bp)
GACTAGTACTACCTTTTGCTGTTCT
LOC_Os03g55220
Os.51847.1.S1_x_at--1040--10711Chr03:31365394..31365418 (25 bp)
TTGCTGTTCTTTTGGAGAGGCTGCT
LOC_Os03g55220
Os.51847.1.S1_x_at--499--1091Chr03:31365442..31365466 (25 bp)
AGTGGCGCAGGGATGCACATTCCAT
LOC_Os03g55220
Os.51847.1.S1_x_at--1106--7031Chr03:31365521..31365545 (25 bp)
GTACAAGTACTAATGCTCCTGCTTA
LOC_Os03g55220
Os.51847.1.S1_x_at--562--3731Chr03:31365530..31365554 (25 bp)
CTAATGCTCCTGCTTAAGCTTTTTT
LOC_Os03g55220
Target Sequence 
ATTGCTGCGTGCTGATCGTCCAGGGCAGCAGCTGGCCTAATCTGATGACTGCCATATACTCTACTCTACTCCACTTTCTT
CACAGCTGCAGGGTTTTAGAACTAAGCCAGATCTTTTGGGGGGCTAATCTGTTTTAGAAATCGACTAGTACTACCTTTTG
CTGTTCTTTTGGAGAGGCTGCTGCTGAGTTCATGGGAAATTGGAAAGTGGCGCAGGGATGCACATTCCATCGCCAGCAAA
GAACTGAAGTGTGTAAATGGAGGGTGGGGTTTTAGCTGATTAAAGTACAAGTACTAATGCTCCTGCTTAAGCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51847.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis