Browse Element(s) Details


OsAffx.13491.1.S1_at

Description tigr:9631.m05379
TID=OsAffx.13491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5518011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55130Os.26714.1.S1_at9/113+31317009..31320400expressed protein
LOC_Os03g55140Os.54730.1.S1_at10/113+31321240..31326138transducin family protein, putative, expressed
LOC_Os03g55150Os.318.1.S1_at11/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55150Os.57450.1.S1_x_at1/113+31327332..31329830Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os03g55164Os.2898.1.S1_at11/113+31330339..31337999WRKY DNA binding domain containing protein, expressed
LOC_Os03g55180OsAffx.13491.1.S1_at11/113+31338223..31341263expressed protein
LOC_Os03g55189Os.50619.1.S1_at1/113+31343187..31344256NA
LOC_Os03g55189Os.50619.1.S1_x_at1/113+31343187..31344256NA
LOC_Os03g55200Os.51697.1.S1_at11/113+31349833..31352265origin recognition complex subunit 5, putative, expressed
LOC_Os03g55210OsAffx.25717.1.S1_at11/113+31353463..31356366protein kinase family protein, putative, expressed
LOC_Os03g55220Os.51847.1.S1_x_at11/113+31360998..31365561Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13491.1.S1_at--984--7351Chr03:31339266..31339383 (25 bp)
GTGAACATTCAGATGCCTACCTATC
LOC_Os03g55180
OsAffx.13491.1.S1_at--1096--10271Chr03:31339006..31339030 (25 bp)
TTTCCGGTAGACAGCAATGTGCCCT
LOC_Os03g55180
OsAffx.13491.1.S1_at--627--771Chr03:31338990..31339014 (25 bp)
ATGTGCCCTACACTGAGAGGCTGAA
LOC_Os03g55180
OsAffx.13491.1.S1_at--526--6831Chr03:31338954..31338978 (25 bp)
GTTTGGTGAACCCTGACGACTTACA
LOC_Os03g55180
OsAffx.13491.1.S1_at--662--8931Chr03:31338941..31338965 (25 bp)
TGACGACTTACAGCTCAGTGCAGCT
LOC_Os03g55180
OsAffx.13491.1.S1_at--309--9851Chr03:31338895..31338919 (25 bp)
TACAACCAGAAACCGGTGCTGTCTC
LOC_Os03g55180
OsAffx.13491.1.S1_at--125--1291Chr03:31338704..31338728 (25 bp)
AGATCGATCTCGATGTCCACCGTTT
LOC_Os03g55180
OsAffx.13491.1.S1_at--963--3331Chr03:31338687..31338711 (25 bp)
CACCGTTTCAGCTTCATTTCAAGGA
LOC_Os03g55180
OsAffx.13491.1.S1_at--1161--3611Chr03:31338621..31338645 (25 bp)
CTTGATCTTGGCCTGACCATTCAGG
LOC_Os03g55180
OsAffx.13491.1.S1_at--1--8091Chr03:31338499..31338523 (25 bp)
GGAGCTACCTGAGCATGTCTTGTGC
LOC_Os03g55180
OsAffx.13491.1.S1_at--588--9751Chr03:31338460..31338484 (25 bp)
TAAGATCGACTTTGCCGACAGCGGG
LOC_Os03g55180
Target Sequence 
GTGAACATTCAGATGCCTACCTATCCAGCAACCGTGTTTGGCGAGAACGACGGCGATGGGATAAGCCTAGTTCTTTATTT
CAAGCTATCTGACAGTTTTGACAAGGAAATTTCTCCTCAACTAAAAGAAAGCATCAAGAAGCTTATGGGTGATGAAATGG
AGAGAGTTAAGGGGTTTCCGGTAGACAGCAATGTGCCCTACACTGAGAGGCTGAAAATTCTGGCTGGTTTGGTGAACCCT
GACGACTTACAGCTCAGTGCAGCTGAGAGGAAGCTTGTGCAAACCTACAACCAGAAACCGGTGCTGTCTCGCCCCCAGCA
CAAATTCTTCAAGGGGCCAAACTACTTCGAGATCGATCTCGATGTCCACCGTTTCAGCTTCATTTCAAGGAAAGGGCTTG
AGGCCTTCAGGGAACGATTGAAACATGGAGTTCTTGATCTTGGCCTGACCATTCAGGCACAGAAGGCAGAGGAGCTACCT
GAGCATGTCTTGTGCTGCATGAGGCTGAATAAGATCGACTTTGCCGACAGCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis