Browse Element(s) Details


Os.2906.1.S1_at

Description gb:AK120423.1
DB_XREF= gi:37990046
TID=Os.2906.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095D02, full insert sequence.
FL= gb:AK120423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5498010/11UPF0139 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54930OsAffx.3609.1.S1_at11/113+31164464..31170865Leo1
LOC_Os03g54930Os.36267.1.S1_s_at1/113+31164464..31170865Leo1
LOC_Os03g54950Os.28943.1.S1_x_at2/113+31175400..31178099retrotransposon protein, putative, unclassified
LOC_Os03g54960NANA3+31178916..31184684retrotransposon protein, putative, unclassified
LOC_Os03g54970OsAffx.25715.1.S1_at10/113+31189616..31193242expressed protein
LOC_Os03g54980Os.2906.1.S1_at10/113+31194901..31198079UPF0139 protein, putative, expressed
LOC_Os03g54990NANA3+31208076..31208663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55000NANA3+31215407..31215985hypothetical protein
LOC_Os03g55010Os.2901.1.S1_at3/113+31220943..31223588UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2906.1.S1_at--224--7131Chr03:31195132..31195426 (25 bp)
GTCATGCTCCGGTACAAGGTGTGCT
LOC_Os03g54980
Os.2906.1.S1_at--970--2211Chr03:31195415..31195439 (25 bp)
ACAAGGTGTGCTCGTGGATCGCTAT
LOC_Os03g54980
Os.2906.1.S1_at--713--7971Chr03:31195430..31195454 (25 bp)
GGATCGCTATCATCTTCTGCGCGCA
LOC_Os03g54980
Os.2906.1.S1_at--971--9151Chr03:31195447..31195471 (25 bp)
TGCGCGCAGTCTCTGGTGAACATGA
LOC_Os03g54980
Os.2906.1.S1_at--753--3491NONE
CATGGCTTTCATGTTTGCAGTTATG
NONE
Os.2906.1.S1_at--90--4931Chr03:31197833..31197857 (25 bp)
GCTTGGTGACGAACTATCTTGGCCC
LOC_Os03g54980
Os.2906.1.S1_at--589--9411Chr03:31197861..31197885 (25 bp)
TCGTCCAGGCACAAAGCGCTAATCA
LOC_Os03g54980
Os.2906.1.S1_at--196--1591Chr03:31197875..31197899 (25 bp)
AGCGCTAATCAGGATGCACACTATG
LOC_Os03g54980
Os.2906.1.S1_at--445--731Chr03:31197930..31197954 (25 bp)
ATGTTCCAGAAGCTATTGGCCGCGC
LOC_Os03g54980
Os.2906.1.S1_at--711--4151Chr03:31197950..31197974 (25 bp)
CGCGCTCACATCTCTGAATTTCATC
LOC_Os03g54980
Os.2906.1.S1_at--584--7071Chr03:31197994..31198018 (25 bp)
GTAATACACTGCCTCAATCATTAGG
LOC_Os03g54980
Target Sequence 
GTCATGCTCCGGTACAAGGTGTGCTCGTGGATCGCTATCATCTTCTGCGCGCAGTCTCTGGTGAACATGAAGAATTTCGA
GAATGATCTCAAGCAGNTATCCATGGCTTTCATGTTTGCAGTTATGGGCTTGGTGACGAACTATCTTGGCCCCCCTCGTC
CAGGCACAAAGCGCTAATCAGGATGCACACTATGCAACTGTATGAGAGTATCACTTGTATTTTTATGTTCCAGAAGCTAT
TGGCCGCGCTCACATCTCTGAATTTCATCTGAGCATGTAGCAAATACAGTAATACACTGCCTCAATCATTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis