Browse Element(s) Details


Os.2961.1.S1_at

Description gb:AK064619.1
DB_XREF= gi:32974637
TID=Os.2961.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (OSJNBa0013M12.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D04, full insert sequence.
FL= gb:AK064619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2534011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25320NANA3+14433532..14435292Peroxidase family protein
LOC_Os03g25330Os.2957.1.S1_at11/113+14448495..14450047Peroxidase family protein, expressed
LOC_Os03g25340Os.2961.1.S1_at11/113+14459349..14461235Peroxidase family protein, expressed
LOC_Os03g25350Os.2971.1.S1_at11/113+14470544..14471231expressed protein
LOC_Os03g25360NANA3+14473791..14475166Peroxidase family protein, expressed
LOC_Os03g25364OsAffx.2425.1.S1_at1/113+14480120..14481635hypothetical protein
LOC_Os03g25370NANA3+14483641..14484776Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2961.1.S1_at--628--8611Chr03:14460793..14460817 (25 bp)
TGGTGCAGGACGTCGTGACGCCCAA
LOC_Os03g25340
Os.2961.1.S1_at--63--7751Chr03:14460914..14460938 (25 bp)
GGTGGTGGACAATGCCAACATCCCC
LOC_Os03g25340
Os.2961.1.S1_at--740--6491Chr03:14460951..14460975 (25 bp)
GATAGGTTCACGAAGGCCATGGTGA
LOC_Os03g25340
Os.2961.1.S1_at--124--411Chr03:14461017..14461041 (25 bp)
ATCAGGAGGAACTGCCGGGCTGTCA
LOC_Os03g25340
Os.2961.1.S1_at--844--7571Chr03:14461033..14461057 (25 bp)
GGGCTGTCAATCACTAGCTCATACA
LOC_Os03g25340
Os.2961.1.S1_at--952--9831Chr03:14461054..14461078 (25 bp)
TACAAATTTACGAGCATGCATGTTT
LOC_Os03g25340
Os.2961.1.S1_at--833--10511Chr03:14461089..14461113 (25 bp)
TTCATGCATATCTATGTTCTATCGT
LOC_Os03g25340
Os.2961.1.S1_at--468--6731Chr03:14461104..14461128 (25 bp)
GTTCTATCGTTAACTGCTGCATCTT
LOC_Os03g25340
Os.2961.1.S1_at--198--4771Chr03:14461119..14461143 (25 bp)
GCTGCATCTTGTCTGTTTATTCTTT
LOC_Os03g25340
Os.2961.1.S1_at--461--10291Chr03:14461146..14461170 (25 bp)
TTTCCACTGATTTCATTTCAAGTCA
LOC_Os03g25340
Os.2961.1.S1_at--444--6211Chr03:14461174..14461198 (25 bp)
GAGGCTTATGTACCATTATATTGTA
LOC_Os03g25340
Target Sequence 
TGGTGCAGGACGTCGTGACGCCCAACAAGCTGGACAACCAGTACTACAAGAACGTGCTCGCGCACAGGGTGCTCTTCACC
TCCGACGCGTCGCTCCTGGCGTCGCCGGCGACGGNNAAGATGGTGGTGGACAATGCCAACATCCCCGGGTGGTGGGAGGA
TAGGTTCACGAAGGCCATGGTGAAGATGGCCAGCATCGAGGTGAAGACCGGNCGGCAATGGCGAGATCAGGAGGAACTGC
CGGGCTGTCAATCACTAGCTCATACAAATTTACGAGCATGCATGTTTAATTAATTTATTCATGCATATCTATGTTCTATC
GTTAACTGCTGCATCTTGTCTGTTTATTCTTTCTTTTCCACTGATTTCATTTCAAGTCAAATGAGGCTTATGTACCATTA
TATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis