Browse Element(s) Details


Os.2971.1.S1_at

Description gb:AK111061.1
DB_XREF= gi:32996270
TID=Os.2971.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.2971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0013M12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-D08, full insert sequence.
FL= gb:AK111061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2535011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25330Os.2957.1.S1_at11/113+14448495..14450047Peroxidase family protein, expressed
LOC_Os03g25340Os.2961.1.S1_at11/113+14459349..14461235Peroxidase family protein, expressed
LOC_Os03g25350Os.2971.1.S1_at11/113+14470544..14471231expressed protein
LOC_Os03g25360NANA3+14473791..14475166Peroxidase family protein, expressed
LOC_Os03g25364OsAffx.2425.1.S1_at1/113+14480120..14481635hypothetical protein
LOC_Os03g25370NANA3+14483641..14484776Peroxidase family protein, expressed
LOC_Os03g25374NANA3+14486690..14487365hypothetical protein
LOC_Os03g25380Os.32006.1.S1_at9/113+14491283..14493091pentatricopeptide, putative, expressed
LOC_Os03g25390Os.2960.1.S1_at11/113+14493018..14497172Novel plant SNARE 11, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2971.1.S1_at--149--8051Chr03:14470596..14470620 (25 bp)
GGAGATACACACAAGCAATAGCCAT
LOC_Os03g25350
Os.2971.1.S1_at--893--8471Chr03:14470620..14470644 (25 bp)
TGGCGAGACAACAACTCCTAGGTTT
LOC_Os03g25350
Os.2971.1.S1_at--655--4751Chr03:14470698..14470722 (25 bp)
GCTGCGACCAAGACCGGCAGGACAT
LOC_Os03g25350
Os.2971.1.S1_at--1128--8071Chr03:14470759..14470783 (25 bp)
GGAGCCCAAAATCGAGCCGTCAGAG
LOC_Os03g25350
Os.2971.1.S1_at--977--4551Chr03:14470791..14470815 (25 bp)
GCGCCGTGTGGCAAAGGGCCAACAT
LOC_Os03g25350
Os.2971.1.S1_at--134--5971Chr03:14470868..14470892 (25 bp)
GAGAAGGTCGTCTATGTCGCCAAGT
LOC_Os03g25350
Os.2971.1.S1_at--685--7151Chr03:14470877..14470901 (25 bp)
GTCTATGTCGCCAAGTTCTGCAAGA
LOC_Os03g25350
Os.2971.1.S1_at--628--2811Chr03:14470889..14470913 (25 bp)
AAGTTCTGCAAGAAGCCGTTCCAGC
LOC_Os03g25350
Os.2971.1.S1_at--89--10691Chr03:14470907..14470931 (25 bp)
TTCCAGCCTGGCTACCAGTGCGGAA
LOC_Os03g25350
Os.2971.1.S1_at--50--1971Chr03:14471039..14471063 (25 bp)
ACTGTTCCATCGAGCCTAGGGCAAT
LOC_Os03g25350
Os.2971.1.S1_at--790--7931Chr03:14471120..14471144 (25 bp)
GGATTAGTTTTCATGTCTCGTGACA
LOC_Os03g25350
Target Sequence 
GGAGATACACACAAGCAATAGCCATGGCGAGACAACAACTCCTAGGTTTGTTCTTGGTCCTCNGCCATTATGGTGGCGNT
CGTGTGGGGCGACCCTAGCGGCGGCTGCGACCAAGACCGGCAGGACATGATCCGGGAGTGCAAGAAGTACGAGGGGTGGC
CGGCGGAGCCCAAAATCGAGCCGTCAGAGGCGTGCTGCGCCGTGTGGCAAAGGGCCAACATCCCCTGCCTGTGCGCCGGC
GTCACCAAGGAGAAGGAGAAGGTGTGGTGCATGGAGAAGGTCGTCTATGTCGCCAAGTTCTGCAAGAAGCCGTTCCAGCC
TGGCTACCAGTGCGGAAGNTACACTGTTCCATCGAGCCTAGGGCAATAAATAGTACGTTGTTACTGATTTTTATTTTTCC
TTGTGACAGAAGAAGTACTTCTGGGATTAGTTTTCATGTCTCGTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis