Browse Element(s) Details


Os.2957.1.S1_at

Description gb:AK120411.1
DB_XREF= gi:37990034
TID=Os.2957.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092B13, full insert sequence.
FL= gb:AK099751.1 gb:AK120411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2533011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25300Os.19737.1.S1_at11/113+14424307..14425682Peroxidase family protein, expressed
LOC_Os03g25304NANA3+14425940..14426473Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g25310NANA3+14427400..14428222hypothetical protein
LOC_Os03g25314OsAffx.13024.1.S1_at11/113+14429059..14429430hypothetical protein
LOC_Os03g25320NANA3+14433532..14435292Peroxidase family protein
LOC_Os03g25330Os.2957.1.S1_at11/113+14448495..14450047Peroxidase family protein, expressed
LOC_Os03g25340Os.2961.1.S1_at11/113+14459349..14461235Peroxidase family protein, expressed
LOC_Os03g25350Os.2971.1.S1_at11/113+14470544..14471231expressed protein
LOC_Os03g25360NANA3+14473791..14475166Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2957.1.S1_at--1040--2731Chr03:14449500..14449524 (25 bp)
AAGAACGTGCTCGACCACAAGGTGC
LOC_Os03g25330
Os.2957.1.S1_at--1147--8971Chr03:14449633..14449657 (25 bp)
TGAAGTTGGCGAGCATCCAGGTGAA
LOC_Os03g25330
Os.2957.1.S1_at--66--5471Chr03:14449685..14449709 (25 bp)
GAACTGCAGGGTCATCAACTACTGA
LOC_Os03g25330
Os.2957.1.S1_at--1127--9751Chr03:14449711..14449735 (25 bp)
TAATCTACAAGTTTAGCTGCGTGAT
LOC_Os03g25330
Os.2957.1.S1_at--835--4771Chr03:14449726..14449750 (25 bp)
GCTGCGTGATTCAATTACCTGGTGA
LOC_Os03g25330
Os.2957.1.S1_at--270--9971Chr03:14449741..14449765 (25 bp)
TACCTGGTGAAGTACGTGCTCAACG
LOC_Os03g25330
Os.2957.1.S1_at--151--3751Chr03:14449759..14449783 (25 bp)
CTCAACGATGACGACGTACACGGTT
LOC_Os03g25330
Os.2957.1.S1_at--323--2151Chr03:14449794..14449818 (25 bp)
ACACCCTCCTTGATCAAGTCGCAAG
LOC_Os03g25330
Os.2957.1.S1_at--133--2851Chr03:14449809..14449833 (25 bp)
AAGTCGCAAGCGTACGTGTTGATGA
LOC_Os03g25330
Os.2957.1.S1_at--899--3571Chr03:14449863..14449887 (25 bp)
CATTTATGTTCTCCCTCTTTTGTTA
LOC_Os03g25330
Os.2957.1.S1_at--629--6811Chr03:14449999..14450023 (25 bp)
GTTTTTTGCAACAAGTGCCCGCTAT
LOC_Os03g25330
Target Sequence 
AAGAACGTGCTCGACCACAAGGTGCTCTTCACCTCTGACGCGGCGCTCCTGACGTCGCCGGAGACGGCGAAGATGGTGGT
GGACAACGCCGTCATCCCCNNGGGTGGTGGGAGGACAGGTTCAAGGCGGCCATGGTGAAGTTGGCGAGCATCCAGGTGAA
GACCGGGTACCAGGGGCAGATCAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCTGCGTGATTC
AATTACCTGGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAA
GCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTA
ATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTA
CTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGTGCCCGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis