Browse Element(s) Details


OsAffx.13024.1.S1_at

Description tigr:9631.m02476
TID=OsAffx.13024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2531411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25260OsAffx.13021.1.S1_s_at11/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260Os.55755.1.S1_at4/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260OsAffx.13021.1.S1_at1/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25270Os.2952.2.S1_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270Os.2952.1.S1_x_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270OsAffx.30040.1.S1_at1/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25280Os.2965.1.S1_at11/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25280Os.19737.1.S1_at1/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25289NANA3+14417534..14418374auxin induced protein, putative
LOC_Os03g25300Os.19737.1.S1_at11/113+14424307..14425682Peroxidase family protein, expressed
LOC_Os03g25304NANA3+14425940..14426473Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g25310NANA3+14427400..14428222hypothetical protein
LOC_Os03g25314OsAffx.13024.1.S1_at11/113+14429059..14429430hypothetical protein
LOC_Os03g25320NANA3+14433532..14435292Peroxidase family protein
LOC_Os03g25330Os.2957.1.S1_at11/113+14448495..14450047Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13024.1.S1_at--801--10851Chr03:14429341..14429365 (25 bp)
TTGGAGCGGGTGACCTCTAAGGTTC
LOC_Os03g25314
OsAffx.13024.1.S1_at--396--5811Chr03:14429344..14429368 (25 bp)
GAGCGGGTGACCTCTAAGGTTCAGT
LOC_Os03g25314
OsAffx.13024.1.S1_at--1010--3951Chr03:14429347..14429371 (25 bp)
CGGGTGACCTCTAAGGTTCAGTGGT
LOC_Os03g25314
OsAffx.13024.1.S1_at--914--10531Chr03:14429363..14429387 (25 bp)
TTCAGTGGTGTATTGGACTTATTGA
LOC_Os03g25314
OsAffx.13024.1.S1_at--59--1111Chr03:14429366..14429390 (25 bp)
AGTGGTGTATTGGACTTATTGAGCC
LOC_Os03g25314
OsAffx.13024.1.S1_at--390--8611Chr03:14429368..14429392 (25 bp)
TGGTGTATTGGACTTATTGAGCCTC
LOC_Os03g25314
OsAffx.13024.1.S1_at--390--7431Chr03:14429370..14429394 (25 bp)
GTGTATTGGACTTATTGAGCCTCCT
LOC_Os03g25314
OsAffx.13024.1.S1_at--632--6871Chr03:14429372..14429396 (25 bp)
GTATTGGACTTATTGAGCCTCCTGT
LOC_Os03g25314
OsAffx.13024.1.S1_at--689--11Chr03:14429374..14429398 (25 bp)
ATTGGACTTATTGAGCCTCCTGTAC
LOC_Os03g25314
OsAffx.13024.1.S1_at--88--10871Chr03:14429375..14429399 (25 bp)
TTGGACTTATTGAGCCTCCTGTACC
LOC_Os03g25314
OsAffx.13024.1.S1_at--315--8531Chr03:14429376..14429400 (25 bp)
TGGACTTATTGAGCCTCCTGTACCT
LOC_Os03g25314
Target Sequence 
TTGGAGCGGGTGACCTCTAAGGTTCAGTGGTGTATTGGACTTATTGAGCCTCCTGTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis