Browse Element(s) Details


OsAffx.13021.1.S1_s_at

Description tigr:9631.m02467
TID=OsAffx.13021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2526011/11HIT zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25200Os.47463.1.S1_x_at6/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25200Os.14491.2.S1_x_at4/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25210NANA3+14387557..14390889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25220OsAffx.25221.2.S1_s_at11/113+14392390..14393712F-box domain containing protein
LOC_Os03g25240OsAffx.25221.2.S1_s_at11/113+14397827..14399166F-box domain containing protein
LOC_Os03g25250OsAffx.13020.1.S1_at11/113+14401786..14403135hypothetical protein
LOC_Os03g25260OsAffx.13021.1.S1_s_at11/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260Os.55755.1.S1_at4/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260OsAffx.13021.1.S1_at1/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25270Os.2952.2.S1_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270Os.2952.1.S1_x_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270OsAffx.30040.1.S1_at1/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25280Os.2965.1.S1_at11/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25280Os.19737.1.S1_at1/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25289NANA3+14417534..14418374auxin induced protein, putative
LOC_Os03g25300Os.19737.1.S1_at11/113+14424307..14425682Peroxidase family protein, expressed
LOC_Os03g25304NANA3+14425940..14426473Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g25310NANA3+14427400..14428222hypothetical protein
LOC_Os03g25314OsAffx.13024.1.S1_at11/113+14429059..14429430hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13021.1.S1_s_at--499--5231Chr03:14406064..14406088 (25 bp)
GAATATGAAGCGCAAGACGAGGCAA
LOC_Os03g25260
OsAffx.13021.1.S1_s_at--775--5291Chr03:14406106..14406130 (25 bp)
GAAGGCGGCGAGATCTTTCATGGAC
LOC_Os03g25260
OsAffx.13021.1.S1_s_at--966--4691Chr03:14406110..14406134 (25 bp)
GCGGCGAGATCTTTCATGGACGTGT
LOC_Os03g25260
OsAffx.13021.1.S1_s_at--39--6051Chr03:14406115..14406139 (25 bp)
GAGATCTTTCATGGACGTGTTACAG
LOC_Os03g25260
OsAffx.13021.1.S1_s_at--733--9551Chr03:14406119..14406143 (25 bp)
TCTTTCATGGACGTGTTACAGGAGG
LOC_Os03g25260
OsAffx.13021.1.S1_s_at--709--8391Chr03:14406361..14406385 (25 bp)
GGCGCCATTACTGCTCGGTCTGCGG
LOC_Os03g25260
OsAffx.13021.1.S1_s_at--1140--131Chr03:14406367..14406391 (25 bp)
ATTACTGCTCGGTCTGCGGCAGCAC
LOC_Os03g25260
OsAffx.13021.1.S1_s_at--647--5052Chr10:19784253..19784355 (24 bp)
GCAGCACGGCGAACTACACGTGCGT
NONE
OsAffx.13021.1.S1_s_at--941--1931Chr03:14406390..14406414 (25 bp)
ACGGCGAACTACACGTGCGTCAGGT
LOC_Os03g25260
OsAffx.13021.1.S1_s_at--570--2531Chr03:14406396..14406420 (25 bp)
AACTACACGTGCGTCAGGTGCGGGA
LOC_Os03g25260
OsAffx.13021.1.S1_s_at--574--1031Chr03:14406411..14406435 (25 bp)
AGGTGCGGGACGAGGTTCTGCTCGT
LOC_Os03g25260
Target Sequence 
GAATATGAAGCGCAAGACGAGGCAAGGGAAGGCATTGGAGAAGAAGGCGGCGAGATCTTTCATGGACGTGTTACAGGAGG
GCCGCCGTTGGTCCCCCGAGCACCTCGTCCCGGCGCCATTACTGCTCGGTCTGCGGCAGCACGGCGAACTACACGTGCGT
CAGGTGCGGGACGAGGTTCTGCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13021.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis