Browse Element(s) Details


OsAffx.25221.2.S1_s_at

Description tigr:9631.m02463
TID=OsAffx.25221.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2522011/11F-box domain containing protein
LOC_Os03g2524011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25170NANA3+14371990..14372673retrotransposon protein, putative, unclassified
LOC_Os03g25180NANA3+14373710..14374554retrotransposon protein, putative, unclassified
LOC_Os03g25190OsAffx.13020.1.S1_at11/113+14375854..14377149F-box domain containing protein
LOC_Os03g25200Os.47463.1.S1_x_at6/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25200Os.14491.2.S1_x_at4/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25210NANA3+14387557..14390889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25220OsAffx.25221.2.S1_s_at11/113+14392390..14393712F-box domain containing protein
LOC_Os03g25240OsAffx.25221.2.S1_s_at11/113+14397827..14399166F-box domain containing protein
LOC_Os03g25250OsAffx.13020.1.S1_at11/113+14401786..14403135hypothetical protein
LOC_Os03g25260OsAffx.13021.1.S1_s_at11/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260Os.55755.1.S1_at4/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260OsAffx.13021.1.S1_at1/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25270Os.2952.2.S1_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270Os.2952.1.S1_x_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270OsAffx.30040.1.S1_at1/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25280Os.2965.1.S1_at11/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25280Os.19737.1.S1_at1/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25289NANA3+14417534..14418374auxin induced protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25221.2.S1_s_at--286--3452Chr03:14398562..14398586 (25 bp)
CAGTTTCTCGTGGCCGTCTTCAACA
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--106--92Chr03:14398697..14398721 (25 bp)
ATTGCCACGGCAAGCTGTGCGCCCT
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--205--3252Chr03:14398784..14398808 (25 bp)
CAAGCTGGCGGCTTCAGCGGAAGAT
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--221--1632Chr03:14398799..14398823 (25 bp)
AGCGGAAGATCGACTACTACTACTC
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--647--4132Chr03:14398894..14398918 (25 bp)
CGCTTCTCGACAGCCGATGTGGTGG
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--1048--4052Chr03:14398908..14398932 (25 bp)
CGATGTGGTGGAGGTTCTGCCCAAT
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--1--9492Chr03:14398923..14398947 (25 bp)
TCTGCCCAATGGTGTCGATGACGAT
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--947--4452Chr03:14399054..14399078 (25 bp)
GCCTGATGATGCATAGGCAGTGCAT
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--1022--10092Chr03:14399067..14399091 (25 bp)
TAGGCAGTGCATATTGCCGCGCGAG
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--1044--1032Chr03:14399090..14399114 (25 bp)
AGGTGAGCTTCGGTGACGCGTCTCA
LOC_Os03g25240
OsAffx.25221.2.S1_s_at--913--8932Chr03:14399103..14399127 (25 bp)
TGACGCGTCTCAGGTTCCTTGGGAG
LOC_Os03g25240
Target Sequence 
CAGTTTCTCGTGGCCGTCTTCAACATGGAACGGGAGGAATTCCGGCTGATGGAGGCCCCCGGGGGGCAAGGAGTGCGCTT
CGGCTCGCACTCGCACACGATGATGGGAATGCACATCACCCATTGCCACGGCAAGCTGTGCGCCCTCGCCGACGAGCCGG
GCGCCAACGCGTTGGGGATGTGGGTGCTCGACGACTACTCCGACCCAACAAGCTGGCGGCTTCAGCGGAAGATCGACTAC
TACTACTCGTGCGGCGCCGGCGGCGCCGGTGCTGCTCTCGACGACGACCCACACGCCGCCGCCGCTCAAACTTTTCGTGC
CCGCTTCTCGACAGCCGATGTGGTGGAGGTTCTGCCCAATGGTGTCGATGACGATGACGAGGGCGAGGAGATCCTGCTCC
AGCTTGGTGACGAGGAGGTCGTGTACAATGTTGGGCGCGCGGCGTGGCGCAGGTGGGGGATATTGCCGCTGACTACACGC
CGCCTGATGATGCATAGGCAGTGCATATTGCCGCGCGAGGTGAGCTTCGGTGACGCGTCTCAGGTTCCTTGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25221.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis