Browse Element(s) Details


Os.2965.1.S1_at

Description gb:AU184429
DB_XREF= gi:14192218
DB_XREF=AU184429
CLONE=R2273
TID=Os.2965.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.2965 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180053.1 (A.thaliana) putative peroxidase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2528011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25210NANA3+14387557..14390889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25220OsAffx.25221.2.S1_s_at11/113+14392390..14393712F-box domain containing protein
LOC_Os03g25240OsAffx.25221.2.S1_s_at11/113+14397827..14399166F-box domain containing protein
LOC_Os03g25250OsAffx.13020.1.S1_at11/113+14401786..14403135hypothetical protein
LOC_Os03g25260OsAffx.13021.1.S1_s_at11/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260Os.55755.1.S1_at4/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260OsAffx.13021.1.S1_at1/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25270Os.2952.2.S1_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270Os.2952.1.S1_x_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270OsAffx.30040.1.S1_at1/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25280Os.2965.1.S1_at11/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25280Os.19737.1.S1_at1/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25289NANA3+14417534..14418374auxin induced protein, putative
LOC_Os03g25300Os.19737.1.S1_at11/113+14424307..14425682Peroxidase family protein, expressed
LOC_Os03g25304NANA3+14425940..14426473Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g25310NANA3+14427400..14428222hypothetical protein
LOC_Os03g25314OsAffx.13024.1.S1_at11/113+14429059..14429430hypothetical protein
LOC_Os03g25320NANA3+14433532..14435292Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2965.1.S1_at--1045--3991Chr03:14415100..14415124 (25 bp)
CGTCAACTAATCATCTATATATTGA
LOC_Os03g25280
Os.2965.1.S1_at--1112--51Chr03:14415080..14415104 (25 bp)
ATTGAATTCAACGTGTGTTCCATCA
LOC_Os03g25280
Os.2965.1.S1_at--543--1891Chr03:14415070..14415094 (25 bp)
ACGTGTGTTCCATCAAATTTTCTCA
LOC_Os03g25280
Os.2965.1.S1_at--678--2251Chr03:14415056..14415080 (25 bp)
AAATTTTCTCATTGCTACGTTTTGT
LOC_Os03g25280
Os.2965.1.S1_at--661--10571Chr03:14415051..14415075 (25 bp)
TTCTCATTGCTACGTTTTGTTTTTG
LOC_Os03g25280
Os.2965.1.S1_at--934--3591Chr03:14415047..14415071 (25 bp)
CATTGCTACGTTTTGTTTTTGTATT
LOC_Os03g25280
Os.2965.1.S1_at--976--10391Chr03:14415031..14415055 (25 bp)
TTTTGTATTTATTCGTTCATTCTTT
LOC_Os03g25280
Os.2965.1.S1_at--571--6551Chr03:14414986..14415010 (25 bp)
GATTATTATATATGTCCTCTCCTAT
LOC_Os03g25280
Os.2965.1.S1_at--429--231Chr03:14414979..14415003 (25 bp)
ATATATGTCCTCTCCTATTATGTAA
LOC_Os03g25280
Os.2965.1.S1_at--840--10111Chr03:14414976..14415000 (25 bp)
TATGTCCTCTCCTATTATGTAATTG
LOC_Os03g25280
Os.2965.1.S1_at--41--7271Chr03:14414973..14414997 (25 bp)
GTCCTCTCCTATTATGTAATTGTGT
LOC_Os03g25280
Target Sequence 
CGTCAACTAATCATCTATATATTGAATTCAACGTGTGTTCCATCAAATTTTCTCATTGCTACGTTTTGTTTTTGTATTTA
TTCGTTCATTCTTTTGTGTAGTGTATTTTGTGTTGATTATTATATATGTCCTCTCCTATTATGTAATTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis