Browse Element(s) Details


Os.29747.1.S1_at

Description gb:AK109830.1
DB_XREF= gi:32995039
TID=Os.29747.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0455H0310.31 (P0455H0310.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C02, full insert sequence.
FL= gb:AK109830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g382608/11Cellulase containing protein, expressed
LOC_Os10g093002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g339802/11retrotransposon protein, putative, unclassified
LOC_Os07g225701/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38220OsAffx.24628.1.S1_at11/112+23110383..23114600eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os02g38230OsAffx.24629.1.S1_at11/112+23115502..23117230NAR2.2, putative, expressed
LOC_Os02g38240Os.19872.1.S1_at10/112+23121042..23124033rhodanese family protein, putative, expressed
LOC_Os02g38250Os.6276.1.S1_at11/112+23126195..23134470expressed protein
LOC_Os02g38260Os.29747.1.S1_at8/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38260Os.29747.2.S1_at3/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38270NANA2+23139767..23141128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38280OsAffx.21897.5.S1_x_at4/112+23141444..23144385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38290Os.49646.1.S1_at11/112+23147015..23149010Cytochrome P450 family protein, expressed
LOC_Os02g38300Os.24671.1.A1_at9/112+23153983..23157474SNF7 family protein, expressed
LOC_Os02g38310NANA2+23158663..23159891hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29747.1.S1_at--188--7531Chr02:23137397..23137421 (25 bp)
GGGCCGACGAGGTGTACGGCGTCCT
LOC_Os02g38260
Os.29747.1.S1_at--460--9931Chr02:23137411..23137435 (25 bp)
TACGGCGTCCTCGACTGGTCGTGGA
LOC_Os02g38260
Os.29747.1.S1_at--1050--7251Chr02:23137417..23137441 (25 bp)
GTCCTCGACTGGTCGTGGAGCAAGC
LOC_Os02g38260
Os.29747.1.S1_at--814--5731Chr02:23137423..23137447 (25 bp)
GACTGGTCGTGGAGCAAGCCCCGCA
LOC_Os02g38260
Os.29747.1.S1_at--996--8591Chr02:23137426..23137450 (25 bp)
TGGTCGTGGAGCAAGCCCCGCAACG
LOC_Os02g38260
Os.29747.1.S1_at--20--4611Chr02:23137450..23137474 (25 bp)
GCGACCGCGCTCTCGAGGATCCAGT
LOC_Os02g38260
Os.29747.1.S1_at--656--4811Chr02:23137458..23137482 (25 bp)
GCTCTCGAGGATCCAGTCGCTGCAG
LOC_Os02g38260
Os.29747.1.S1_at--1047--9371Chr02:23137462..23137486 (25 bp)
TCGAGGATCCAGTCGCTGCAGCGCC
LOC_Os02g38260
Os.29747.1.S1_at--443--8273Chr03:19346416..19346435 (20 bp)
GGCAGTGATGTCATCCTGACATCAT
LOC_Os03g33980
Os.29747.1.S1_at--179--7134Chr03:19346420..19346611 (25 bp)
GTCATCCTGACATCATAAATTTTTT
LOC_Os03g33980
Os.29747.1.S1_at--12--10591Chr01:18248936..18248960 (25 bp)
TTCTGAATTAGGTGAAAAACTGATT
NONE
Target Sequence 
GGGCCGACGAGGTGTACGGCGTCCTCGACTGGTCGTGGAGCAAGCCCCGCAACGCGACCGCGCTCTCGAGGATCCAGTCG
CTGCAGCGCCCGCTCCGAGGGCCTGGCTACGACGAGGCGAGGCCGTACACCGTGCTGTTCCACCCGCCGCCGTAGCCGCT
TCAGCCGCCTCGCGCCGTCGCCGTGGTGGTCGTCGCCGGTCGCCGTCGCTTTCACCGGGTTCGCGAGGAGAAGCCGCAGA
CCGTCAATCCCTTCATCGGCGTTGCAACCCGCCGGAAAGCCGTCGTCGCCGTCAACCCGAAGCCGCCGCTTTTGGAAGCT
CGTCGCCGGCCGTTTTCTGTCGTCGATTGTCGTCGCCGTCACCACCGGTGGGTTCCTCTCGTCGTGCTCGTTGCGATGGT
GCTCTCTGTTTGCGCCGTTGTGCCTTCGTTCGCCGGCGGTTGTGTGGTCCAGAACCATGCCCGGCAGTGATGTCATCCTG
ACATCATAAATTTTTTATTTAAATCGTAATAATTTTCTGAATTAGGTGAAAAACTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis