Browse Element(s) Details


Os.29747.2.S1_at

Description gb:AK109907.1
DB_XREF= gi:32995116
TID=Os.29747.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0455H0310.31 (P0455H0310.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-G06, full insert sequence.
FL= gb:AK109907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g382603/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38220OsAffx.24628.1.S1_at11/112+23110383..23114600eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os02g38230OsAffx.24629.1.S1_at11/112+23115502..23117230NAR2.2, putative, expressed
LOC_Os02g38240Os.19872.1.S1_at10/112+23121042..23124033rhodanese family protein, putative, expressed
LOC_Os02g38250Os.6276.1.S1_at11/112+23126195..23134470expressed protein
LOC_Os02g38260Os.29747.1.S1_at8/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38260Os.29747.2.S1_at3/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38270NANA2+23139767..23141128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38280OsAffx.21897.5.S1_x_at4/112+23141444..23144385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38290Os.49646.1.S1_at11/112+23147015..23149010Cytochrome P450 family protein, expressed
LOC_Os02g38300Os.24671.1.A1_at9/112+23153983..23157474SNF7 family protein, expressed
LOC_Os02g38310NANA2+23158663..23159891hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29747.2.S1_at--376--6111Chr02:23138049..23138073 (25 bp)
GAGTGCGACCCAGAGACCCAGTGGT
LOC_Os02g38260
Os.29747.2.S1_at--82--5991Chr02:23138061..23138085 (25 bp)
GAGACCCAGTGGTTCAAGCTCGTCA
LOC_Os02g38260
Os.29747.2.S1_at--90--3371Chr02:23138126..23138150 (25 bp)
CACCGTGGCGCGAGGGCTAATTGCT
LOC_Os02g38260
Os.29747.2.S1_at--838--71Chr02:23138145..23138169 (25 bp)
ATTGCTGCGTGAAAATCGACCGATC
NONE
Os.29747.2.S1_at--984--6451Chr02:23138166..23138190 (25 bp)
GATCAATCGATCGTGTCCGTGCATT
NONE
Os.29747.2.S1_at--731--7451Chr02:23138178..23138202 (25 bp)
GTGTCCGTGCATTCGTCATCAGAGA
NONE
Os.29747.2.S1_at--208--551Chr02:23138221..23138245 (25 bp)
ATCCGCGAACACAACACTATACTAG
NONE
Os.29747.2.S1_at--992--4851Chr02:23138248..23138272 (25 bp)
GCTAGCTGACTTGCATTGATCTTGG
NONE
Os.29747.2.S1_at--130--2831Chr02:23138277..23138301 (25 bp)
AAGTTAGAGAGTTCGTGTCACGCAC
NONE
Os.29747.2.S1_at--912--7211Chr02:23138333..23138357 (25 bp)
GTCGATGTATCCATGTACTGTTACT
NONE
Os.29747.2.S1_at--770--7292Chr02:23138363..23138387 (25 bp)
GTGCGCTTGAGCTGAACCATTGAAC
NONE
Target Sequence 
GAGTGCGACCCAGAGACCCAGTGGTTCAAGCTCGTCACCAGCACGAGGTCCCCGGCCACCGGCGCCGCCGCGGCGGCCAC
CGTGGCGCGAGGGCTAATTGCTGCGTGAAAATCGACCGATCAATCGATCGTGTCCGTGCATTCGTCATCAGAGAATCGAA
ATCTTATTTAAAATCCGCGAACACAACACTATACTAGCTGCTAGCTGACTTGCATTGATCTTGGATGGAAGTTAGAGAGT
TCGTGTCACGCACGTGGCGCGCGCCAAGCTGCAGTTCATGTGTGGTCGATGTATCCATGTACTGTTACTGAACAGTGCGC
TTGAGCTGAACCATTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29747.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis