Browse Element(s) Details


Os.29825.2.S1_at

Description gb:AK069963.1
DB_XREF= gi:32979987
TID=Os.29825.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29825 (NCBI UniGene Cluster)
UG_TITLE=Putative seed imbibition protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037J05, full insert sequence.
FL= gb:AK069963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2480011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24770OsAffx.18996.1.S1_at10/1111+13609305..13611667hypothetical protein
LOC_Os11g24780OsAffx.7192.1.S1_at11/1111+13617725..13621452expressed protein
LOC_Os11g24790Os.56299.1.S1_at11/1111+13630191..13631990retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g24800Os.29825.2.S1_at11/1111+13634000..13636629expressed protein
LOC_Os11g24810Os.14919.1.S1_at3/1111+13638084..13643523Transposable element protein, putative, MuDR
LOC_Os11g24810OsAffx.29313.1.S1_at1/1111+13638084..13643523Transposable element protein, putative, MuDR
LOC_Os11g24810Os.56216.1.S1_at1/1111+13638084..13643523Transposable element protein, putative, MuDR
LOC_Os11g24820NANA11+13653324..13654256expressed protein
LOC_Os11g24830NANA11+13655377..13659705retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29825.2.S1_at--1138--6351Chr11:13634435..13634459 (25 bp)
GATACAAAGGCACAAGCCCAAGTTT
LOC_Os11g24800
Os.29825.2.S1_at--970--3831Chr11:13634384..13634408 (25 bp)
CTGAGCAGCTCGGTTCGAATCTGAA
LOC_Os11g24800
Os.29825.2.S1_at--652--9471Chr11:13634365..13634389 (25 bp)
TCTGAAGGTGAGGTTGGGCATATCT
LOC_Os11g24800
Os.29825.2.S1_at--897--433Chr11:13634324..13634348 (25 bp)
ATCTTTCCAACGAGTACTCATATGG
LOC_Os11g24800
Os.29825.2.S1_at--959--4814Chr11:13634289..13634313 (25 bp)
GCTCATATGCAAATTTGGCGCCCGT
LOC_Os11g24800
Os.29825.2.S1_at--539--4551Chr11:13634272..13634296 (25 bp)
GCGCCCGTTTGAAGCCAACTCTATT
LOC_Os11g24800
Os.29825.2.S1_at--276--3255Chr09:3298294..3298313 (20 bp)
CAACTCTATTGCAGGTGGCCGAATT
NONE
Os.29825.2.S1_at--847--7473Chr11:13634218..13634242 (25 bp)
GTGTGGGATCTTGATGACTTCCATT
LOC_Os11g24800
Os.29825.2.S1_at--877--6312Chr11:13634206..13634230 (25 bp)
GATGACTTCCATTTGATGTATGATG
LOC_Os11g24800
Os.29825.2.S1_at--738--812Chr09:3266596..3266619 (24 bp)
ATGGTGCTCTTCACGTAGTGCATGA
NONE
Os.29825.2.S1_at--618--10073Chr09:3266610..3266634 (25 bp)
TAGTGCATGATCTTGCCCATAGAAG
NONE
Target Sequence 
GATACAAAGGCACAAGCCCAAGTTTCAGATGCGAAAACTATTTTGGTCATTCTGAGCAGCTCGGTTCGAATCTGAAGGTG
AGGTTGGGCATATCTGAAAGTAGACAACAAGATCTTTCCAACGAGTACTCATATGGTTGAAATGGAGCTCATATGCAAAT
TTGGCGCCCGTTTGAAGCCAACTCTATTGCAGGTGGCCGAATTGGATTTCCGAAGTTGTGTGGGATCTTGATGACTTCCA
TTTGATGTATGATGTGAGCAATGGTTCTATCTGTAGTAGGCATGGTCACATCATCCTCTCCTTTTTCACAGAAAACCGTC
CTCAGTTTTGCCATATGGTGCTCTTCACGTAGTGCATGATCTTGCCCATAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29825.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis