Browse Element(s) Details


Os.29965.1.S1_at

Description gb:AK109596.1
DB_XREF= gi:32994805
TID=Os.29965.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-D05, full insert sequence.
FL= gb:AK109596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30170OsAffx.6449.1.S1_at11/119+18359710..18362282F-box protein interaction domain containing protein, expressed
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30200Os.54184.1.S1_at11/119+18380039..18383341expressed protein
LOC_Os09g30210Os.29965.1.S1_at11/119+18386471..18390683expressed protein
LOC_Os09g30220Os.50526.1.S1_at11/119+18390893..18396838NB-ARC domain containing protein, expressed
LOC_Os09g30230Os.51899.1.S1_at11/119+18401209..18403263RXO1 disease resistance protein, putative, expressed
LOC_Os09g30240Os.56193.1.S1_at11/119+18410577..18412162Phosphofructokinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29965.1.S1_at--531--10151Chr09:18390089..18390113 (25 bp)
TATCGGGACAGTGATCGGCATGCCA
LOC_Os09g30210
Os.29965.1.S1_at--757--1971Chr09:18390117..18390141 (25 bp)
ACTCCTTCACCAATGCGCGGAATAA
LOC_Os09g30210
Os.29965.1.S1_at--762--3751Chr09:18390163..18390187 (25 bp)
CTCAGGAGCAGCCTTGGCGTCAAGA
LOC_Os09g30210
Os.29965.1.S1_at--1025--8831Chr09:18390218..18390242 (25 bp)
TGATCACTACCATTTTGCCCGGGAA
LOC_Os09g30210
Os.29965.1.S1_at--940--6151Chr09:18390305..18390329 (25 bp)
GAGGTACGTCGATTTCCTGGAAAAT
LOC_Os09g30210
Os.29965.1.S1_at--577--3051Chr09:18390340..18390364 (25 bp)
AATCTGTTCGGAGGCAGGAGCACCT
LOC_Os09g30210
Os.29965.1.S1_at--802--971Chr09:18390355..18390379 (25 bp)
AGGAGCACCTGCGAAGGCTGATTGC
LOC_Os09g30210
Os.29965.1.S1_at--624--811Chr09:18390415..18390439 (25 bp)
ATGGGTGTATCTTTTATCTGCTTGT
LOC_Os09g30210
Os.29965.1.S1_at--284--8751Chr09:18390437..18390461 (25 bp)
TGTAGAACAGATGAACTCGCCCTTT
LOC_Os09g30210
Os.29965.1.S1_at--512--5471Chr09:18390449..18390473 (25 bp)
GAACTCGCCCTTTCAAGATGTGATA
LOC_Os09g30210
Os.29965.1.S1_at--453--9591Chr09:18390657..18390681 (25 bp)
TCATATATGCACAGCGTTTCGAGCG
LOC_Os09g30210
Target Sequence 
TATCGGGACAGTGATCGGCATGCCAGGCACTCCTTCACCAATGCGCGGAATAACCAGAAGTAGCTTCCCTGCACCTCAGG
AGCAGCCTTGGCGTCAAGAGAGATATATTATGGATCCAGAAGTAAGAGATGATCACTACCATTTTGCCCGGGAATACCCG
AGGAATCTGCAGGAGTATGAAATGGAGAGGCAGGTGATGCCAGGAGGAACCAGGTTGAGGTACGTCGATTTCCTGGAAAA
TCGTTACGAGGAATCTGTTCGGAGGCAGGAGCACCTGCGAAGGCTGATTGCAGAGTATGGTGGATACGACTGATGGTCTT
CAGTGTATGGGTGTATCTTTTATCTGCTTGTAGAACAGATGAACTCGCCCTTTCAAGATGTGATATGCTCGGTCTGATAT
GGGTATTGAAAGATGCTTTTGGGTTGAAGCTGTACAGGTAGAGTCATNTTGTGTGGCAAATTATCGTCTAGCCACAAAAA
CATAGCAGCATAAGGAAATGCTCTTTAGTGTAAGAAATCCTATACTTTCAGGCAATAGTTGCTACCTGCAACAAGCCAAC
AACTATCTTCATATATGCACAGCGTTTCGAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis