Browse Element(s) Details


Os.29992.2.S1_x_at

Description gb:NM_188736.1
DB_XREF= gi:34904555
GEN=B1066G12.23
TID=Os.29992.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.29992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1066G12.23 (B1066G12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1066G12.23 (B1066G12.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1416011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g304603/11hypothetical protein
LOC_Os06g315703/11hypothetical protein
LOC_Os04g077202/11hypothetical protein
LOC_Os04g168501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14120OsAffx.11045.1.S1_at11/111+7921197..7921589hypothetical protein
LOC_Os01g14130OsAffx.23232.1.S1_x_at11/111+7923660..7924361expressed protein
LOC_Os01g14130OsAffx.23232.1.S1_at11/111+7923660..7924361expressed protein
LOC_Os01g14140Os.10494.1.S1_at11/111+7924892..7926564Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os01g14160Os.29992.2.S1_x_at11/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_x_at2/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_at1/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14170OsAffx.31422.1.S1_at1/111+7937178..7940562hypothetical protein
LOC_Os01g14180OsAffx.23233.1.S1_at11/111+7942016..7943774expressed protein
LOC_Os01g14180OsAffx.23239.1.S1_x_at1/111+7942016..7943774expressed protein
LOC_Os01g14190OsAffx.13631.4.S1_s_at11/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14190OsAffx.22917.1.S1_x_at3/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14200NANA1+7950225..7961102AT hook motif-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29992.2.S1_x_at--1073--2331Chr01:7933884..7933908 (25 bp)
AAAGAGCGGCGAACGCAATGGCACA
LOC_Os01g14160
Os.29992.2.S1_x_at--751--2771Chr01:7933885..7933909 (25 bp)
AAGAGCGGCGAACGCAATGGCACAA
LOC_Os01g14160
Os.29992.2.S1_x_at--347--1631Chr01:7933888..7933912 (25 bp)
AGCGGCGAACGCAATGGCACAAGCG
LOC_Os01g14160
Os.29992.2.S1_x_at--1134--919Chr07:14453699..14453723 (25 bp)
AGGCTTTTTATAGCGCGAGGGAGCA
NONE
Os.29992.2.S1_x_at--418--10358Chr07:9666358..9666382 (25 bp)
TTTTTATAGCGCGAGGGAGCAACGG
NONE
Os.29992.2.S1_x_at--208--8035Chr06:18421053..18421302 (25 bp)
GGAGTGGCGAATTTGGAGCGGCAAC
NONE
Os.29992.2.S1_x_at--202--2879Chr07:24837831..24837850 (20 bp)
AAGTGGAGCTCGATCCCGGCGCGAT
NONE
Os.29992.2.S1_x_at--1129--1771Chr01:7934209..7934233 (25 bp)
ACCGATTTCACTCGGTTTGGGTGCG
LOC_Os01g14160
Os.29992.2.S1_x_at--66--8092Chr01:7934236..7934260 (25 bp)
GGCACGAGTGGGAGGGCCGGAATCG
LOC_Os01g14160
Os.29992.2.S1_x_at--293--8012Chr01:7934246..7934270 (25 bp)
GGAGGGCCGGAATCGGTGGCGACGT
LOC_Os01g14160
Os.29992.2.S1_x_at--1105--4896Chr07:9666601..9666625 (25 bp)
GCTTCGGGCGGTTGCTGGCCGGGAT
NONE
Target Sequence 
AAAGAGCGGCGAACGCAATGGCACAAGCGGCGCGGCGCGGGGACGGCGGCAGCGGCCGGCTGGAGGGTCGCCGGCGAGCG
GCGGCGCTTGGGCTCGCGTGGGGAGCACGGGAGAGGGCGCGAGGAGCTCGGGGAGGAAGGGTAAATGGAAGAGGAGAGCA
CGGGGAGGCTTTTTATAGCGCGAGGGAGCAACGGGGAGGCCGGGGAGTGGCGAATTTGGAGCGGCAACGGCCGGCGACGT
GGGCGACATCGTGGGTGAAGTGGAGCTCGATCCCGGCGCGATTTTTGGGGGAAACGTGGGGAGAGTGTAGAGCAAGTGGA
GGGGAACCGATTTCACTCGGTTTGGGTGCGAGGGCACGAGTGGGAGGGCCGGAATCGGTGGCGACGTGGGCGGCAACGGG
CGGCATGGCGGCTTCGGGCGGTTGCTGGCCGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29992.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis