Browse Element(s) Details


Os.30617.1.S1_at

Description gb:AK108587.1
DB_XREF= gi:32993796
TID=Os.30617.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439B06.19 (P0439B06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B03, full insert sequence.
FL= gb:AK108587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0211011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02060Os.12560.1.S1_s_at11/111+573291..576371Leucine Rich Repeat family protein, expressed
LOC_Os01g02070OsAffx.22936.1.S1_at9/111+582765..583247pectinesterase inhibitor domain containing protein
LOC_Os01g02080Os.35815.1.S1_at11/111+583225..584558peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os01g02090Os.1644.1.S1_at11/111+585671..590539expressed protein
LOC_Os01g02100Os.35391.2.S1_x_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02100Os.35391.1.S1_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02110Os.30617.1.S1_at11/111+600445..602445Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g02120Os.29115.1.S1_at11/111+609366..612433MOTHER of FT and TF1 protein, putative, expressed
LOC_Os01g02130Os.30376.1.S1_at11/111+617374..618318expressed protein
LOC_Os01g02140NANA1+620870..621289expressed protein
LOC_Os01g02150Os.1653.1.S1_at11/111+622788..623811expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30617.1.S1_at--396--3291Chr01:601303..601327 (25 bp)
CAAAGTTCTTCAGGATCTCGTGCCT
LOC_Os01g02110
Os.30617.1.S1_at--592--7851Chr01:601146..601170 (25 bp)
GGTAGACTTGGTCACCATGCTAGAA
LOC_Os01g02110
Os.30617.1.S1_at--344--6431Chr01:601116..601140 (25 bp)
GATCAACTACGTCAAATTCCTCCAG
LOC_Os01g02110
Os.30617.1.S1_at--133--9931Chr01:600899..600923 (25 bp)
TACTGATGAGTTCTGGCCGGCACAA
LOC_Os01g02110
Os.30617.1.S1_at--894--1071Chr01:600872..600896 (25 bp)
AGGGAAAGCACCAGAGCTCTCTCAA
LOC_Os01g02110
Os.30617.1.S1_at--693--9252Chr02:21542616..21542793 (25 bp)
TCCTATCTTCTCAGCATCCAAACAA
NONE
Os.30617.1.S1_at--1038--7031Chr01:600710..600734 (25 bp)
GTAACAGGGCTTCTGCTCTGAAAAG
LOC_Os01g02110
Os.30617.1.S1_at--994--3411Chr01:600659..600683 (25 bp)
CAGAGTTGGAAATCAGTCGTGCATC
LOC_Os01g02110
Os.30617.1.S1_at--668--7011Chr01:600564..600588 (25 bp)
GTACTTCAGTCATCAGAGTTCTTTC
LOC_Os01g02110
Os.30617.1.S1_at--128--6071Chr01:600549..600573 (25 bp)
GAGTTCTTTCACTTTATAGCAAGGA
LOC_Os01g02110
Os.30617.1.S1_at--113--5951Chr01:600490..600514 (25 bp)
GAGCACTGCAAATTCGCTTGCTACT
LOC_Os01g02110
Target Sequence 
CAAAGTTCTTCAGGATCTCGTGCCTAATGGCACAAAGGTAGACTTGGTCACCATGCTAGAAAAGGCGATCAACTACGTCA
AATTCCTCCAGCTGCAAGTGAAGGTTTTGGCTACTGATGAGTTCTGGCCGGCACAAGGAGGGAAAGCACCAGAGCTCTCT
CAAGTCAAGGACGCCTTGGACGCCATCCTATCTTCTCAGCATCCAAACAAATGATGTTGTGCTGCTGACACAAAATGCAT
CAAATTTCACAAAGCTAATATTAAGTTTGATGCATGTAAGATCTTTAGAACAGAGGCAATGTAACAGGGCTTCTGCTCTG
AAAAGATGAGAGAATTGTTCTATTGGACTTTCAGAGTTGGAAATCAGTCGTGCATCTTAGATGTTTTTTTTCACTCTTTT
TTCCTAGATCAATTCTTTCTTGTTTTGTTGCCAAAGCCTGAGTAATGTACTTCAGTCATCAGAGTTCTTTCACTTTATAG
CAAGGATGTAGTGTAGGTATCAGTTAGAAAACAAGAATCTGAGCACTGCAAATTCGCTTGCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis