Browse Element(s) Details


Os.30965.1.S1_at

Description gb:AK108052.1
DB_XREF= gi:32993261
TID=Os.30965.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal RNA apurinic site specific lyase (P0045F02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H04, full insert sequence.
FL= gb:AK108052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1871011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18670OsAffx.28511.1.S1_at11/117+11031928..11033821hypothetical protein
LOC_Os07g18680OsAffx.28512.2.S1_s_at11/117+11036307..11038689hypothetical protein
LOC_Os07g18680OsAffx.28512.1.S1_at10/117+11036307..11038689hypothetical protein
LOC_Os07g18690Os.45173.1.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18690OsAffx.31892.2.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18700OsAffx.29376.1.S1_x_at1/117+11049242..11052644plasma membrane sulphate transporter, putative
LOC_Os07g18710Os.30965.1.S1_at11/117+11058618..11060085F-box domain containing protein, expressed
LOC_Os07g18720Os.37765.1.S1_at10/117+11063192..11073589expressed protein
LOC_Os07g18720Os.11874.1.S1_s_at6/117+11063192..11073589expressed protein
LOC_Os07g18730OsAffx.21085.1.S1_at11/117+11075388..11078929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18739NANA7+11083129..11083356NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30965.1.S1_at--644--6691Chr07:11059472..11059496 (25 bp)
GTTCCACTCGATGCGGGCTGTTAGA
LOC_Os07g18710
Os.30965.1.S1_at--811--6331Chr07:11059513..11059537 (25 bp)
GATGCTTGAAGACTCTGGCGCTAGA
LOC_Os07g18710
Os.30965.1.S1_at--668--10031Chr07:11059534..11059558 (25 bp)
TAGAGATGGTCGATCCGCAGGTGAA
LOC_Os07g18710
Os.30965.1.S1_at--933--2651Chr07:11059557..11059581 (25 bp)
AAGCCTGTGGTTGATTTTCTCCGGT
LOC_Os07g18710
Os.30965.1.S1_at--940--8551Chr07:11059594..11059704 (25 bp)
TGGAGGCGCTCTATATCACGTCACA
LOC_Os07g18710
Os.30965.1.S1_at--889--7091Chr07:11059699..11059723 (25 bp)
GTCACATATGTTTGAGCCACGGAGT
LOC_Os07g18710
Os.30965.1.S1_at--1063--571Chr07:11059755..11059779 (25 bp)
ATCCAATTGAATGCCTCAACCGTCA
LOC_Os07g18710
Os.30965.1.S1_at--1031--5291Chr07:11059815..11059839 (25 bp)
GAAGGCGTGAACTTCAGCTTGCCAG
LOC_Os07g18710
Os.30965.1.S1_at--225--1551Chr07:11059830..11059854 (25 bp)
AGCTTGCCAGGTTTCTTGTTTCTAA
LOC_Os07g18710
Os.30965.1.S1_at--517--6931Chr07:11059947..11059971 (25 bp)
GTAGGCTATCTTTAGGACCACAGGT
LOC_Os07g18710
Os.30965.1.S1_at--1042--5851Chr07:11059993..11060017 (25 bp)
GAGCCATACTAGGTTTCGGAAGCAT
LOC_Os07g18710
Target Sequence 
GTTCCACTCGATGCGGGCTGTTAGATTGGCGGCGGAGTTCCGATGCTTGAAGACTCTGGCGCTAGAGATGGTCGATCCGC
AGGTGAAGCCTGTGGTTGATTTTCTCCGGTGTTTCCCGTGCTTGGAGGCGCTCTATATCACGTCACATATGTTTGAGCCA
CGGAGTATGGAAACACTAAAGTGTGATAACATGGATTATCCAATTGAATGCCTCAACCGTCACCTCAAGAAAGTGGTGCT
TGCAGGATACGAAGGGCGAAGGCGTGAACTTCAGCTTGCCAGGTTTCTTGTTTCTAATGCAAGAGTCCTACAGGTTATGA
AATTTTTGTGTGCAAATGATTGCAAACCAACATGGTTGGCTAGCCAAAAAAGGCAGTTGTGCTGGGAGAGTAGGCTATCT
TTAGGACCACAGGTTATTTTTGAGGTATACAGGAAGAGCCATACTAGGTTTCGGAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis