Browse Element(s) Details


Os.31008.1.S1_at

Description gb:AK107993.1
DB_XREF= gi:32993202
TID=Os.31008.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0011G08.23 (P0011G08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-F10, full insert sequence.
FL= gb:AK107993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0634011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06300Os.14919.1.S1_at3/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06300OsAffx.29313.1.S1_at1/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06310Os.6389.1.S1_at11/111+2996395..2997985expressed protein
LOC_Os01g06320Os.31652.1.S1_at11/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06320Os.31652.2.S1_x_at10/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06330NANA1+3007213..3008966hypothetical protein
LOC_Os01g06340Os.31008.1.S1_at11/111+3010717..3011553expressed protein
LOC_Os01g06350NANA1+3012647..3013219hypothetical protein
LOC_Os01g06360Os.38172.1.S1_x_at5/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06360Os.43567.1.S1_x_at2/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31008.1.S1_at--645--1371Chr01:3011293..3011317 (25 bp)
AGAGCTCGTGGACGCGTCCAGAAAT
LOC_Os01g06340
Os.31008.1.S1_at--175--5451Chr01:3011146..3011170 (25 bp)
GAACGCTGGAATCAAGCTCCTTGAA
LOC_Os01g06340
Os.31008.1.S1_at--970--7012Chr03:14668836..14668855 (20 bp)
GTACATCAGTGTTGACGGGTGCCGC
NONE
Os.31008.1.S1_at--1110--3251Chr01:3010903..3010927 (25 bp)
CAACTGATTCCGTCGAGACTTCATA
LOC_Os01g06340
Os.31008.1.S1_at--109--1411Chr01:3010888..3010912 (25 bp)
AGACTTCATATGCTGGATTCCTCGT
LOC_Os01g06340
Os.31008.1.S1_at--449--6571Chr01:3010873..3010897 (25 bp)
GATTCCTCGTTGGTCTGTCGATCTC
LOC_Os01g06340
Os.31008.1.S1_at--848--6411Chr01:3010854..3010878 (25 bp)
GATCTCTTTCTCGTGTTTGCCATTC
LOC_Os01g06340
Os.31008.1.S1_at--47--8811Chr01:3010825..3010849 (25 bp)
TGTTCCTGCTTTATGACCTGTTCGT
LOC_Os01g06340
Os.31008.1.S1_at--619--5831Chr01:3010811..3010835 (25 bp)
GACCTGTTCGTGACGTCTGATCGAT
LOC_Os01g06340
Os.31008.1.S1_at--657--5031Chr01:3010746..3010770 (25 bp)
GCAGTTGTGCTACCTCTATATCGAT
LOC_Os01g06340
Os.31008.1.S1_at--199--6373Chr03:14671526..14671550 (25 bp)
GATCCTCACCTGGATTCTGTGGATT
NONE
Target Sequence 
AGAGCTCGTGGACGCGTCCAGAAATCTCGCCTCCGCGATGTCCCTCATGAAGGTGGCCGAGCTCCTCGCGCTCCACGGCG
GCAGCGTCAACCCGTCGACGCATCTGGGCGAGATCAGCCTCCTTGGCGACCAGTACCTCGCGGAGCGGAACGCTGGAATC
AAGCTCCTTGAAGCCGGCAAGGACGCCCGAAAAGCGTACATCAGTGTTGACGGGTGCCGCGGCAACCTGGATGCGATCCT
CCTCCTGCTGGACCATCCTCGTGTCCCTTGCGTCGACGACTTCATCGAGGAGGAGCTCTTCGTCGCCGGCGATAACCTCC
AGGGCGCGATCGGGAATGCGAAGTTGGGCACCGAGAGGGCCGTCGGCGCCCGGCAGGATGTATCCGGCGCCAACTGATTC
CGTCGAGACTTCATATGCTGGATTCCTCGTTGGTCTGTCGATCTCTTTCTCGTGTTTGCCATTCCACCTGTTCCTGCTTT
ATGACCTGTTCGTGACGTCTGATCGATGAATTCTGAAACATTGGTTGAACATATTGGTTGATTTTGTGCAGTTGTGCTAC
CTCTATATCGATCCTCACCTGGATTCTGTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis