Browse Element(s) Details


Os.3122.1.S1_at

Description gb:AY028315.1
DB_XREF= gi:13508484
TID=Os.3122.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.3122 (NCBI UniGene Cluster)
DEF=Oryza sativa ADP-glucose pyrophosphorylase small subunit mRNA, complete cds.
PROD=ADP-glucose pyrophosphorylase small subunit
FL= gb:AK060270.1 gb:AY028315.1 gb:AK073146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1266011/11Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12590NANA9+7217962..7219515Sugar transporter family protein, expressed
LOC_Os09g12600Os.4694.1.S1_at11/119+7221188..7224657Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os09g12610OsAffx.29820.1.S1_at11/119+7225823..7226459hypothetical protein
LOC_Os09g12620Os.52109.1.S1_at11/119+7230651..7231571expressed protein
LOC_Os09g12630Os.55367.1.S1_at10/119+7232384..7233198expressed protein
LOC_Os09g12640OsAffx.6256.1.S1_at11/119+7234109..7234508hypothetical protein
LOC_Os09g12650OsAffx.6257.1.S1_at11/119+7239336..7243604Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative
LOC_Os09g12660Os.3122.1.S1_at11/119+7244359..7248813Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os09g12670OsAffx.24421.1.S1_at7/119+7250983..7251387transposon protein, putative, unclassified
LOC_Os09g12680NANA9+7256831..7257067hypothetical protein
LOC_Os09g12690NANA9+7264424..7266380retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12700NANA9+7266567..7269153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12710Os.21026.1.S1_at11/119+7270228..7275920THO complex subunit 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019252biological_processstarch biosynthesis
GO:0010170cellular_componentglucose-1-phosphate adenylyltransferase complex
GO:0030931cellular_componentADPG pyrophosphorylase complex (sensu Eukaryota)
GO:0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3122.1.S1_at--284--10131Chr09:7246117..7246141 (25 bp)
TATGACCGTTCTGCCGCAATTTATA
LOC_Os09g12660
Os.3122.1.S1_at--301--5191Chr09:7246102..7246126 (25 bp)
GCAATTTATACGCAACCTCGATACT
LOC_Os09g12660
Os.3122.1.S1_at--656--6471Chr09:7246083..7246107 (25 bp)
GATACTTGCCTCCATCAAAAGTTCT
LOC_Os09g12660
Os.3122.1.S1_at--1075--2631Chr09:7245818..7245842 (25 bp)
AACCATTCTGTGGTTGGACTCCGGT
LOC_Os09g12660
Os.3122.1.S1_at--85--10051Chr09:7245769..7245793 (25 bp)
TAGAGGACTCTCTGCTAATGGGTGC
LOC_Os09g12660
Os.3122.1.S1_at--376--10311Chr09:7245636..7245660 (25 bp)
TTTCTGAGACTGGTGGCATTCCCAT
LOC_Os09g12660
Os.3122.1.S1_at--703--10791Chr09:7244976..7245000 (25 bp)
TTGTCACTGTGATCAAGGACGCCTT
LOC_Os09g12660
Os.3122.1.S1_at--315--8091Chr09:7244960..7244984 (25 bp)
GGACGCCTTAATCCCTAGCGGAACA
LOC_Os09g12660
Os.3122.1.S1_at--1100--9831Chr09:7244929..7244953 (25 bp)
TAAAGGCAACCAATCACCACTGTAC
LOC_Os09g12660
Os.3122.1.S1_at--1101--8611Chr09:7244673..7244697 (25 bp)
TGGTGATCTGATCTCCAGTGCACAT
LOC_Os09g12660
Os.3122.1.S1_at--193--2611Chr09:7244632..7244656 (25 bp)
AACGCTGTGGTTTATTCCATGCTGC
LOC_Os09g12660
Target Sequence 
TATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCATCAAAAGTTCTTGATGCTGATGTGACAGACAG
TGTTATTGGTGAAGGTTGTGTTATTAGACATTGCACAATCAACCATTCTGTGGTTGGACTCCGGTCCTGTATATCTGANG
GCGCAGTGATAGAGGACTCTCTGCTAATGGGTGCAGACTATTATGAGACGGAGACGGACAAGAAAGCCCTTTCTGAGACT
GGTGGCATTCCCATTGGTATTGGAAAGAATGCACACATCAGAAAAGCAATAATTGACAAGAATGCTCGTATTGGAGAAAA
TGTTAAGATAATCAATGTCGACAATATCCAAGAAGCTTCAAGGGAGACTGATGGATACTTCATCAAAAGTGGCATTGTCA
CTGTGATCAAGGACGCCTTAATCCCTAGCGGAACAGTCATATAAAGGCAACCAATCACCACTGTACATAAGGTTGGGCCT
TGCAGCATATGGTGATCTGATCTCCAGTGCACATCAAGCAATCAACTTTTAACGCTGTGGTTTATTCCATGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis