Browse Element(s) Details


OsAffx.29820.1.S1_at

Description tigr:9637.m00983
TID=OsAffx.29820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1261011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12560OsAffx.6254.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12560Os.9742.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12570Os.5312.1.S1_at11/119+7204143..7207198Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os09g12580NANA9+7215986..7216375hypothetical protein
LOC_Os09g12590NANA9+7217962..7219515Sugar transporter family protein, expressed
LOC_Os09g12600Os.4694.1.S1_at11/119+7221188..7224657Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os09g12610OsAffx.29820.1.S1_at11/119+7225823..7226459hypothetical protein
LOC_Os09g12620Os.52109.1.S1_at11/119+7230651..7231571expressed protein
LOC_Os09g12630Os.55367.1.S1_at10/119+7232384..7233198expressed protein
LOC_Os09g12640OsAffx.6256.1.S1_at11/119+7234109..7234508hypothetical protein
LOC_Os09g12650OsAffx.6257.1.S1_at11/119+7239336..7243604Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative
LOC_Os09g12660Os.3122.1.S1_at11/119+7244359..7248813Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os09g12670OsAffx.24421.1.S1_at7/119+7250983..7251387transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29820.1.S1_at--195--2551Chr09:7226405..7226429 (25 bp)
AACTCGCCATTGTGTCAGGAAGCCA
LOC_Os09g12610
OsAffx.29820.1.S1_at--1004--4431Chr09:7226400..7226424 (25 bp)
GCCATTGTGTCAGGAAGCCACCGAC
LOC_Os09g12610
OsAffx.29820.1.S1_at--79--5371Chr09:7226339..7226363 (25 bp)
GAAGAGCTAGATCCCGAGCCACCGT
LOC_Os09g12610
OsAffx.29820.1.S1_at--333--9131Chr09:7226315..7226339 (25 bp)
TGCGGCCACTGCACCAGGGAGATGT
LOC_Os09g12610
OsAffx.29820.1.S1_at--414--4411Chr09:7226311..7226335 (25 bp)
GCCACTGCACCAGGGAGATGTTGAG
LOC_Os09g12610
OsAffx.29820.1.S1_at--994--691Chr09:7226276..7226300 (25 bp)
ATGAGGAAGGCAATGACGACAAGGC
LOC_Os09g12610
OsAffx.29820.1.S1_at--568--3911Chr09:7226029..7226267 (25 bp)
CTGGCGGAGCAAGCGATTTGGAACA
LOC_Os09g12610
OsAffx.29820.1.S1_at--1027--3231Chr09:7226020..7226044 (25 bp)
CAAGCGATTTGGAACATTGGATCAA
LOC_Os09g12610
OsAffx.29820.1.S1_at--515--7571Chr09:7225987..7226011 (25 bp)
GGGCTAATTATATGTAGTTGCTATT
LOC_Os09g12610
OsAffx.29820.1.S1_at--916--3091Chr09:7225952..7225976 (25 bp)
AATAGCAACTGCACTGGACCTCAAT
LOC_Os09g12610
OsAffx.29820.1.S1_at--1021--8091Chr09:7225937..7225961 (25 bp)
GGACCTCAATCTGTGCAGTGGTGGT
LOC_Os09g12610
Target Sequence 
AACTCGCCATTGTGTCAGGAAGCCACCGACTCGCTGCTGCGCCGGGGAGATGCCGAGAGGGAGAGGGAAGAGCTAGATCC
CGAGCCACCGTGCGGCCACTGCACCAGGGAGATGTTGAGAGGGAAAGGGATGAGGAAGGCAATGACGACAAGGCCGAGGA
GGCTGGCGGAGCAAGCGATTTGGAACATTGGATCAAGAAATAGAGGGCTAATTATATGTAGTTGCTATTGTGCAGTCACA
ATAGCAACTGCACTGGACCTCAATCTGTGCAGTGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis