Browse Element(s) Details


Os.5312.1.S1_at

Description gb:AK104965.1
DB_XREF= gi:32990174
TID=Os.5312.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C07, full insert sequence.
FL= gb:AK073729.1 gb:AK104965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1257011/11Ubiquitin-conjugating enzyme spm2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12530Os.12763.1.S1_x_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12530Os.12763.2.S1_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12540Os.52420.1.A1_at11/119+7184218..7187146Chlorophyll a-b binding protein E, chloroplast precursor, putative, expressed
LOC_Os09g12550Os.19423.1.S1_at11/119+7188541..7195750expressed protein
LOC_Os09g12560OsAffx.6254.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12560Os.9742.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12570Os.5312.1.S1_at11/119+7204143..7207198Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os09g12580NANA9+7215986..7216375hypothetical protein
LOC_Os09g12590NANA9+7217962..7219515Sugar transporter family protein, expressed
LOC_Os09g12600Os.4694.1.S1_at11/119+7221188..7224657Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os09g12610OsAffx.29820.1.S1_at11/119+7225823..7226459hypothetical protein
LOC_Os09g12620Os.52109.1.S1_at11/119+7230651..7231571expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5312.1.S1_at--703--6171Chr09:7204461..7204485 (25 bp)
GAGGAGTATTTACCTCCTGGCTCAT
LOC_Os09g12570
Os.5312.1.S1_at--621--9711Chr09:7204412..7204436 (25 bp)
TCAACTTGTATTTATCTGGCTCCCG
LOC_Os09g12570
Os.5312.1.S1_at--942--9291Chr09:7204392..7204416 (25 bp)
TCCCGCGCTTAATTGTTTTCTAGTT
LOC_Os09g12570
Os.5312.1.S1_at--94--6771Chr09:7204370..7204394 (25 bp)
GTTCAATTTGATATATGCCCTGCTT
LOC_Os09g12570
Os.5312.1.S1_at--1009--251Chr09:7204358..7204382 (25 bp)
ATATGCCCTGCTTTCTGTGTACCAA
LOC_Os09g12570
Os.5312.1.S1_at--147--8651Chr09:7204343..7204367 (25 bp)
TGTGTACCAACAACCGAGTCCAACT
LOC_Os09g12570
Os.5312.1.S1_at--1014--6091Chr09:7204328..7204352 (25 bp)
GAGTCCAACTTTGCGCCTCGTGATT
LOC_Os09g12570
Os.5312.1.S1_at--1109--6571Chr09:7204307..7204331 (25 bp)
GATTCGTCGGGTGGCTGTTGATTAA
LOC_Os09g12570
Os.5312.1.S1_at--879--5571Chr09:7204196..7204220 (25 bp)
GAAATGTGTAACTGCAGGTCCTTTA
LOC_Os09g12570
Os.5312.1.S1_at--861--7791Chr09:7204180..7204204 (25 bp)
GGTCCTTTATATTGCCTACATGAAT
LOC_Os09g12570
Os.5312.1.S1_at--69--291Chr09:7204155..7204179 (25 bp)
ATAGTCCGTGCATGCTTTTCTTTAA
LOC_Os09g12570
Target Sequence 
GAGGAGTATTTACCTCCTGGCTCATCTCCAGAATTCAGATTCAACATCATCAACTTGTATTTATCTGGCTCCCGCGCTTA
ATTGTTTTCTAGTTCAATTTGATATATGCCCTGCTTTCTGTGTACCAACAACCGAGTCCAACTTTGCGCCTCGTGATTCG
TCGGGTGGCTGTTGATTAAGGAGATGAGTCGGATGAAAAGGGTGATCTGGTTTGGCAAAATTGGCAGTATGAGGGATGTA
AAATTGGAAACAGATGCTGTGTCAAGAAATGTGTAACTGCAGGTCCTTTATATTGCCTACATGAATATAGTCCGTGCATG
CTTTTCTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis