Browse Element(s) Details


Os.9742.1.S1_at

Description gb:AK068174.1
DB_XREF= gi:32978192
TID=Os.9742.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129M17, full insert sequence.
FL= gb:AK068174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1256011/11Ferrochelatase II, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12520NANA9+7175508..7176211hypothetical protein
LOC_Os09g12530Os.12763.1.S1_x_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12530Os.12763.2.S1_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12540Os.52420.1.A1_at11/119+7184218..7187146Chlorophyll a-b binding protein E, chloroplast precursor, putative, expressed
LOC_Os09g12550Os.19423.1.S1_at11/119+7188541..7195750expressed protein
LOC_Os09g12560OsAffx.6254.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12560Os.9742.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12570Os.5312.1.S1_at11/119+7204143..7207198Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os09g12580NANA9+7215986..7216375hypothetical protein
LOC_Os09g12590NANA9+7217962..7219515Sugar transporter family protein, expressed
LOC_Os09g12600Os.4694.1.S1_at11/119+7221188..7224657Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os09g12610OsAffx.29820.1.S1_at11/119+7225823..7226459hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006783biological_processheme biosynthesis
GO:0004325molecular_functionferrochelatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9742.1.S1_at--936--7391Chr09:7203416..7203440 (25 bp)
GTGATGGTGGCTTCTTTTGTTTGGT
LOC_Os09g12560
Os.9742.1.S1_at--277--8611Chr09:7203463..7203487 (25 bp)
TGAGTAAGTAGAAAGGCAGGCTCGT
LOC_Os09g12560
Os.9742.1.S1_at--1008--3471Chr09:7203479..7203503 (25 bp)
CAGGCTCGTGGGATGATAGTGAATA
LOC_Os09g12560
Os.9742.1.S1_at--163--5151Chr09:7203499..7203523 (25 bp)
GAATAGTGATGGTTAAAGTTCCCCT
LOC_Os09g12560
Os.9742.1.S1_at--417--9291Chr09:7203518..7203542 (25 bp)
TCCCCTTTTTTACAGAAGTAATATG
LOC_Os09g12560
Os.9742.1.S1_at--695--4991Chr09:7203542..7203566 (25 bp)
GCATGAAGTCATTGCAAGGTAGCTT
LOC_Os09g12560
Os.9742.1.S1_at--178--5171Chr09:7203555..7203579 (25 bp)
GCAAGGTAGCTTAAGTGGTGGTTTT
LOC_Os09g12560
Os.9742.1.S1_at--649--7031Chr09:7203599..7203623 (25 bp)
GTAAATTGCCAGTCTGTACCAGTTT
LOC_Os09g12560
Os.9742.1.S1_at--753--1151Chr09:7203609..7203633 (25 bp)
AGTCTGTACCAGTTTTCTTGTGCTG
LOC_Os09g12560
Os.9742.1.S1_at--348--10811Chr09:7203626..7203650 (25 bp)
TTGTGCTGGTACAAGGCAAGCCTAT
LOC_Os09g12560
Os.9742.1.S1_at--743--7831Chr09:7203633..7203657 (25 bp)
GGTACAAGGCAAGCCTATCCTTTTT
LOC_Os09g12560
Target Sequence 
GTGATGGTGGCTTCTTTTGTTTGGTTTTTTGCACTAGGGGTTTGGCTTGAGTAAGTAGAAAGGCAGGCTCGTGGGATGAT
AGTGAATAGTGATGGTTAAAGTTCCCCTTTTTTACAGAAGTAATATGCATGAAGTCATTGCAAGGTAGCTTAAGTGGTGG
TTTTAAGCAAGGNNCCTCTANGGGGTAAATTGCCAGTCTGTACCAGTTTTCTTGTGCTGGTACAAGGCAAGCCTATCCTT
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis