Browse Element(s) Details


OsAffx.6256.1.S1_at

Description tigr:9637.m00986
TID=OsAffx.6256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1264011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12580NANA9+7215986..7216375hypothetical protein
LOC_Os09g12590NANA9+7217962..7219515Sugar transporter family protein, expressed
LOC_Os09g12600Os.4694.1.S1_at11/119+7221188..7224657Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os09g12610OsAffx.29820.1.S1_at11/119+7225823..7226459hypothetical protein
LOC_Os09g12620Os.52109.1.S1_at11/119+7230651..7231571expressed protein
LOC_Os09g12630Os.55367.1.S1_at10/119+7232384..7233198expressed protein
LOC_Os09g12640OsAffx.6256.1.S1_at11/119+7234109..7234508hypothetical protein
LOC_Os09g12650OsAffx.6257.1.S1_at11/119+7239336..7243604Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative
LOC_Os09g12660Os.3122.1.S1_at11/119+7244359..7248813Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os09g12670OsAffx.24421.1.S1_at7/119+7250983..7251387transposon protein, putative, unclassified
LOC_Os09g12680NANA9+7256831..7257067hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6256.1.S1_at--975--2671Chr09:7234185..7234209 (25 bp)
AAGCGGTGACGCAGATTTGGGCAAA
LOC_Os09g12640
OsAffx.6256.1.S1_at--115--1231Chr09:7234197..7234221 (25 bp)
AGATTTGGGCAAACGGCGACGACGT
LOC_Os09g12640
OsAffx.6256.1.S1_at--71--8391Chr09:7234211..7234235 (25 bp)
GGCGACGACGTGGATTCAGCCAAAT
LOC_Os09g12640
OsAffx.6256.1.S1_at--108--131Chr09:7234224..7234248 (25 bp)
ATTCAGCCAAATGGGTGGTGCAGGA
LOC_Os09g12640
OsAffx.6256.1.S1_at--827--7491Chr09:7234238..7234262 (25 bp)
GTGGTGCAGGACCTCTTGCTCGCAC
LOC_Os09g12640
OsAffx.6256.1.S1_at--1153--951Chr09:7234245..7234269 (25 bp)
AGGACCTCTTGCTCGCACCGGCAAG
LOC_Os09g12640
OsAffx.6256.1.S1_at--352--4531Chr09:7234353..7234377 (25 bp)
GCCGCCTACGGAGATCTTGCCATTG
LOC_Os09g12640
OsAffx.6256.1.S1_at--17--8051Chr09:7234362..7234386 (25 bp)
GGAGATCTTGCCATTGGCTTGCCAC
LOC_Os09g12640
OsAffx.6256.1.S1_at--475--9191Chr09:7234370..7234394 (25 bp)
TGCCATTGGCTTGCCACTCCGAGGG
LOC_Os09g12640
OsAffx.6256.1.S1_at--573--991Chr09:7234399..7234423 (25 bp)
AGGTCCCGTGCCTCCGTATGGTCAT
LOC_Os09g12640
OsAffx.6256.1.S1_at--964--7271Chr09:7234406..7234430 (25 bp)
GTGCCTCCGTATGGTCATCGGAGAT
LOC_Os09g12640
Target Sequence 
AAGCGGTGACGCAGATTTGGGCAAACGGCGACGACGTGGATTCAGCCAAATGGGTGGTGCAGGACCTCTTGCTCGCACCG
GCAAGGGCGGGTGCCGCCGCCTACGGAGATCTTGCCATTGGCTTGCCACTCCGAGGGGACCAGGTCCCGTGCCTCCGTAT
GGTCATCGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis