Browse Element(s) Details


Os.31358.1.S1_at

Description gb:AK107471.1
DB_XREF= gi:32992680
TID=Os.31358.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.31358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) glucosyltransferase-like protein (P0523A04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B04, full insert sequence.
FL= gb:AK107471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1363411/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13590Os.26753.1.S1_at11/117+7788517..7793327expressed protein
LOC_Os07g13600Os.21424.1.S1_at8/117+7794294..7795285expressed protein
LOC_Os07g13600OsAffx.9136.1.S1_x_at1/117+7794294..7795285expressed protein
LOC_Os07g13610OsAffx.19542.3.S1_x_at3/117+7806884..7810792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g13634Os.31358.1.S1_at11/117+7813746..7830553UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13634Os.28943.1.S1_x_at1/117+7813746..7830553UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13660Os.44283.1.S1_at11/117+7837068..7839562UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13660Os.44283.1.S1_x_at11/117+7837068..7839562UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13669NANA7+7845156..7845498NA
LOC_Os07g13680NANA7+7846883..7851771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13690NANA7+7853335..7856259retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31358.1.S1_at--1122--6091Chr07:7829953..7829977 (25 bp)
GAGTCTGTTCTTTATGTGAGCTTTG
LOC_Os07g13634
Os.31358.1.S1_at--260--5931Chr07:7829979..7830003 (25 bp)
GAGCTTGGCATCTATGGACTCTCAA
LOC_Os07g13634
Os.31358.1.S1_at--508--5371Chr07:7830040..7830064 (25 bp)
GAAATTCCGTTTCTTTGGGTGATCA
LOC_Os07g13634
Os.31358.1.S1_at--792--10231Chr07:7830053..7830077 (25 bp)
TTTGGGTGATCAGGCCTAACTCGGT
LOC_Os07g13634
Os.31358.1.S1_at--405--9811Chr07:7830069..7830093 (25 bp)
TAACTCGGTCCAGGGATCAGAGCAA
LOC_Os07g13634
Os.31358.1.S1_at--1118--2091Chr07:7830094..7830118 (25 bp)
ACATGCCTTCCAGATGGCTTTGAGG
LOC_Os07g13634
Os.31358.1.S1_at--1112--10091Chr07:7830138..7830162 (25 bp)
TATGGTGGTTTCCTGGGCCCCACAA
LOC_Os07g13634
Os.31358.1.S1_at--183--7731Chr07:7830212..7830236 (25 bp)
GGTGGAACTCAACCCTAGAAAGTAT
LOC_Os07g13634
Os.31358.1.S1_at--709--7411Chr07:7830245..7830269 (25 bp)
GTGTTCCGATGATCTGTAGGCCTCA
LOC_Os07g13634
Os.31358.1.S1_at--683--8731Chr07:7830259..7830283 (25 bp)
TGTAGGCCTCAGTTTGCGGACCAAA
LOC_Os07g13634
Os.31358.1.S1_at--629--8011Chr07:7830460..7830484 (25 bp)
GGAGGCTCTTCAAATACTGCAATTG
LOC_Os07g13634
Target Sequence 
GAGTCTGTTCTTTATGTGAGCTTTGGGAGCTTGGCATCTATGGACTCTCAAGAGCTTTTGGAGACAGCGTGGGGATTGGT
CGATAGCGAAATTCCGTTTCTTTGGGTGATCAGGCCTAACTCGGTCCAGGGATCAGAGCAAACATGCCTTCCAGATGGCT
TTGAGGAGGCGACACGTGGCAGGGGTATGGTGGTTTCCTGGGCCCCACAACAAGATGTGCTGAAGCACCGAGCGGTTGGT
GGTTTNTGGACGCACAATGGGTGGAACTCAACCCTAGAAAGTATATGTGATGGTGTTCCGATGATCTGTAGGCCTCAGTT
TGCGGACCAAATGATTAATGCTAGGTATGTCCAAGAGGTATGGAAGATAGGGTTCGAGCTAGAGGGAAAACTGGAGAGGA
GAATGATTGAGAGGGCTGTAAGAAGGTTACTGNGCAGTGAAGAAGGCAAGGAGATGAGGCACAGGGCAAAGGATCTGAAG
AACAAAGCGACGACCTGTATTGAGAAAGGAGGCTCTTCAAATACTGCAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis