Browse Element(s) Details


Os.31521.1.S1_at

Description gb:AY341849.1
DB_XREF= gi:33519185
TID=Os.31521.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.31521 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY8 mRNA, complete cds.
PROD=WRKY8
FL= gb:AK107199.1 gb:AY341849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6108011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61044Os.36162.1.S1_s_at11/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61044Os.36162.1.S1_at10/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61060Os.10716.1.S1_at11/111+35655627..35658056Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g61070Os.6864.1.S1_at11/111+35659554..35660353heavy metal-associated domain containing protein, expressed
LOC_Os01g61080Os.31521.1.S1_at11/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61080OsAffx.13395.1.S1_x_at1/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61090OsAffx.22940.5.S1_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.1.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.3.S1_x_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.5.S1_x_at10/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.18.S1_x_at9/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_at8/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.3.S1_x_at7/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.31552.2.S1_at1/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61100OsAffx.23878.1.S1_at11/111+35689280..35695661transposon protein, putative, unclassified
LOC_Os01g61110OsAffx.23879.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61110Os.28778.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31521.1.S1_at--246--7591Chr01:35677025..35677049 (25 bp)
GGGCTCGTACATGAGCCAGCACCAG
LOC_Os01g61080
Os.31521.1.S1_at--241--1331Chr01:35677057..35677081 (25 bp)
AGAGGCAGAACGACGCGATGCACGC
LOC_Os01g61080
Os.31521.1.S1_at--334--6331Chr01:35677073..35677097 (25 bp)
GATGCACGCCTCGAGAGCCAAGGAA
LOC_Os01g61080
Os.31521.1.S1_at--944--1371Chr01:35677097..35677121 (25 bp)
AGAGCCCGGAGACGACATGTTCTTC
LOC_Os01g61080
Os.31521.1.S1_at--349--1431Chr01:35677123..35677147 (25 bp)
AGAACTCGCTCTACTGACTGAAAGA
LOC_Os01g61080
Os.31521.1.S1_at--730--3051Chr01:35677147..35677171 (25 bp)
AATCGTCGTCGTAGGAATCTCAAAG
LOC_Os01g61080
Os.31521.1.S1_at--989--6991Chr01:35677215..35677239 (25 bp)
GTACGTACCTAGGATATACTGTAGT
LOC_Os01g61080
Os.31521.1.S1_at--897--10791Chr01:35677251..35677275 (25 bp)
TTGTTTATTTGTTTGGAGGGCCCAG
LOC_Os01g61080
Os.31521.1.S1_at--481--851Chr01:35677284..35677308 (25 bp)
ATGGCTGCAGAAAAGGGTACCGTCC
LOC_Os01g61080
Os.31521.1.S1_at--251--6991Chr01:35677300..35677324 (25 bp)
GTACCGTCCCTTAACACTGGAGATG
LOC_Os01g61080
Os.31521.1.S1_at--706--6271Chr01:35677334..35677358 (25 bp)
GATGTACTCCTGTAGGATACACAGC
LOC_Os01g61080
Target Sequence 
GGGCTCGTACATGAGCCAGCACCAGCAGCAGCAGAGGCAGAACGACGCGATGCACGCCTCGAGAGCCAAGGAAGAGCCCG
GAGACGACATGTTCTTCCAGAACTCGCTCTACTGACTGAAAGAATCGTCGTCGTAGGAATCTCAAAGACATGACACGACG
GAAATTGTAGTTTAGGGGGGTTTTGTACTTGTACGTACCTAGGATATACTGTAGTCTTTGATACATTTGTTTATTTGTTT
GGAGGGCCCAGGAATGCAGATGGCTGCAGAAAAGGGTACCGTCCCTTAACACTGGAGATGGGAGGAAAGGATGTACTCCT
GTAGGATACACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis