Browse Element(s) Details


Os.31535.1.A1_at

Description gb:AK107176.1
DB_XREF= gi:32992385
TID=Os.31535.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G09, full insert sequence.
FL= gb:AK107176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g343505/11transposon protein, putative, unclassified
LOC_Os05g088801/11Zinc knuckle family protein
LOC_Os02g506101/11hypothetical protein
LOC_Os08g210601/11Zinc knuckle family protein
LOC_Os03g461341/11hypothetical protein
LOC_Os12g335301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g099191/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g278801/11retrotransposon protein, putative, unclassified
LOC_Os05g160801/11Zinc knuckle family protein
LOC_Os01g506301/11hypothetical protein
LOC_Os04g339101/11hypothetical protein
LOC_Os07g205301/11hypothetical protein
LOC_Os08g218691/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34330Os.43203.1.S1_x_at8/115+20252351..20268126transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34330OsAffx.7197.1.S1_at1/115+20252351..20268126transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34330Os.22702.1.S1_x_at1/115+20252351..20268126transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34340NANA5+20270714..20272296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g34350Os.31535.1.A1_at5/115+20274409..20281035transposon protein, putative, unclassified
LOC_Os05g34350Os.50591.1.S1_at3/115+20274409..20281035transposon protein, putative, unclassified
LOC_Os05g34350OsAffx.22945.1.S1_at1/115+20274409..20281035transposon protein, putative, unclassified
LOC_Os05g34360NANA5+20282112..20282456hypothetical protein
LOC_Os05g34370OsAffx.31069.1.S1_x_at1/115+20283113..20285164retrotransposon protein, putative, unclassified
LOC_Os05g34380OsAffx.14957.1.S1_at11/115+20296312..20297966Cytochrome P450 51, putative
LOC_Os05g34390OsAffx.27157.1.S1_at9/115+20300884..20307630S-locus glycoprotein family protein
LOC_Os05g34390Os.55243.1.S1_at1/115+20300884..20307630S-locus glycoprotein family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31535.1.A1_at--168--79754Chr12:7433596..7433620 (25 bp)
GGATCTTGGGTGAGCACTTGGAATA
NONE
Os.31535.1.A1_at--533--48967Chr12:17726679..17726703 (25 bp)
GCTTATTACTCTTGGAGATGATCTC
NONE
Os.31535.1.A1_at--186--29928Chr12:14076002..14076026 (25 bp)
AATGAAGTTCTTGTGCTGAGATTCT
NONE
Os.31535.1.A1_at--265--46328Chr12:17726821..17726845 (25 bp)
GCTGAGATTCTAGAGGTTTTCCAAG
NONE
Os.31535.1.A1_at--618--59520Chr12:14084282..14084391 (25 bp)
GAGCAACCTACACTTGTGGTGGATT
NONE
Os.31535.1.A1_at--890--795133Chr12:7433854..7433878 (25 bp)
GGATCTTGGTGGTCACTCAATTCTA
NONE
Os.31535.1.A1_at--888--55717Chr12:17726917..17726940 (24 bp)
GAAATTTGCCTAGGAGTGTTTGGGT
NONE
Os.31535.1.A1_at--348--104543Chr11:4067807..4067831 (25 bp)
TTAATCGAGACCCAGCTCTTTGGAG
NONE
Os.31535.1.A1_at--184--955148Chr12:17727008..17727032 (25 bp)
TCTTTGGAGCTCCTCAACGGAGAGT
NONE
Os.31535.1.A1_at--112--95945Chr12:17727069..17727093 (25 bp)
TCTTGTCTCTTTCTGTGATGTTTCT
NONE
Os.31535.1.A1_at--948--7398Chr11:15690464..15690483 (20 bp)
GTGATGTTTCTGTGATCTATCCAAA
NONE
Target Sequence 
GGATCTTGGGTGAGCACTTGGAATATCTCGTGGGNTGTCATCTCGNTGCTTATTACTCTTGGAGATGATCTCCTAGACGG
TTAGNTGTCGCCCGCGAGAATCCGTTGCATATTGTGGATGTCCNGGGTAAGTTTGTGAAGGATCTCCTCTCCTCCGAAAG
GGAANGAGGTAAGTTAATGAAGTTCTTGTGCTGAGATTCTAGAGGTTTTCCAAGTAGAGCAACCTACACTTGTGGTGGAT
TTCTAGAAGTAGGTTGAGTTGGATCTTGGTGGTCACTCAATTCTAGAAATTTGCCTAGGAGTGTTTGGGTTGAAGGCTGT
GGATTTTCTTTGGGGTTTTTGCACAAGTGAGGCAAGGGGTTAATCGAGACCCAGCTCTTTGGAGCTCCTCAACGGAGAGT
AGGATCGCAAGATCCGAACNTTGGAAAAAAATCGCTCTTGTCTCTTTCTGTGATGTTTCTGTGATCTATCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31535.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis