Browse Element(s) Details


Os.31548.1.S1_at

Description gb:AK107150.1
DB_XREF= gi:32992359
TID=Os.31548.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-E02, full insert sequence.
FL= gb:AK107150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3802010/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37980Os.56292.1.S1_x_at3/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37980Os.56292.1.S1_at1/118+23933894..23934957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37990OsAffx.29580.1.S1_at11/118+23940848..23941731expressed protein
LOC_Os08g38000NANA8+23943630..23943914hypothetical protein
LOC_Os08g38010Os.25042.2.S1_at11/118+23946780..23950148expressed protein
LOC_Os08g38010Os.25042.1.S1_x_at11/118+23946780..23950148expressed protein
LOC_Os08g38020Os.31548.1.S1_at10/118+23950258..23951892bZIP transcription factor family protein, expressed
LOC_Os08g38030OsAffx.17391.1.S1_at11/118+23958792..23961393hypothetical protein
LOC_Os08g38040Os.14919.1.S1_at3/118+23969189..23974141SWIM zinc finger family protein
LOC_Os08g38050OsAffx.25258.2.S1_x_at1/118+23974680..23977787expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31548.1.S1_at--624--3731Chr08:23950681..23950705 (25 bp)
CTACTTGTCAAAACGTTGTGCAACT
LOC_Os08g38020
Os.31548.1.S1_at--253--7291Chr08:23950638..23950662 (25 bp)
GTGCCTTTCATGTAATGATGTCACG
LOC_Os08g38020
Os.31548.1.S1_at--520--831Chr08:23950595..23950619 (25 bp)
ATGGATTATGCTTTGGGATTGCTAA
LOC_Os08g38020
Os.31548.1.S1_at--1112--6771Chr08:23950544..23950568 (25 bp)
GTTACCCATAATAACCCAACTGCTG
LOC_Os08g38020
Os.31548.1.S1_at--780--9111Chr08:23950521..23950545 (25 bp)
TGCTGCTCTGTTCTGTAGTTCATTA
LOC_Os08g38020
Os.31548.1.S1_at--680--6911Chr08:23950507..23950531 (25 bp)
GTAGTTCATTAGCTATTTTACCTAG
LOC_Os08g38020
Os.31548.1.S1_at--817--2211Chr08:23950473..23950497 (25 bp)
ACAAGGTTCTGGATGTGTATCAAAC
LOC_Os08g38020
Os.31548.1.S1_at--210--671Chr08:23950431..23950455 (25 bp)
ATGAATGTTCCCATCAAGATCTGAA
LOC_Os08g38020
Os.31548.1.S1_at--491--5431Chr08:23950409..23950433 (25 bp)
GAACCACATATTCCTATTCATTGAG
LOC_Os08g38020
Os.31548.1.S1_at--1110--1451NONE
AGAATCTTAAGGACGAGCCCGGCAA
NONE
Os.31548.1.S1_at--599--5871Chr08:23950347..23950370 (24 bp)
GAGCCCGGCAACATGTGCCACGAAA
LOC_Os08g38020
Target Sequence 
CTACTTGTCAAAACGTTGTGCAACTATGAAGTTAAAAAAAATAGTGCCTTTCATGTAATGATGTCACGGGGTTCAACTAA
CTTGTAATGGATTATGCTTTGGGATTGCTAATGGATGGCATACTTTCTTGATGTTAAGTTACCCATAATAACCCAACTGC
TGCTGCTCTGTTCTGTAGTTCATTAGCTATTTTACCTAGTTGTATCAAACAAGGTTCTGGATGTGTATCAAACAATTTTG
GTACTCCTATATGAATGTTCCCATCAAGATCTGAACCACATATTCCTATTCATTGAGATGCTTATCGAATAGGATTCCAA
AGAATCTTAAGGACGAGCCCGGCAACATGTGCCACGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis