Browse Element(s) Details


Os.316.1.S1_at

Description gb:AK099079.1
DB_XREF= gi:32984288
TID=Os.316.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) monosaccharide transporter 3 (P0617C02.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001I07, full insert sequence.
FL= gb:AK061974.1 gb:AK099079.1 gb:AB052885.1 gb:AK103047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0156011/11Glucose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01520Os.20517.1.S1_at3/117+325036..327480hypothetical protein
LOC_Os07g01530Os.37338.1.S1_at11/117+331575..333127expressed protein
LOC_Os07g01540Os.34030.1.S1_a_at11/117+333525..342004calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g01550Os.20595.1.S1_a_at11/117+342234..348402Leucine Rich Repeat family protein, expressed
LOC_Os07g01560Os.316.1.S1_at11/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560Os.35004.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560OsAffx.7485.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01570NANA7+356762..357220hypothetical protein
LOC_Os07g01580OsAffx.21060.1.S1_at11/117+362611..363127expressed protein
LOC_Os07g01590NANA7+365815..367129hypothetical protein
LOC_Os07g01600Os.14539.1.S1_at11/117+372110..373981Dirigent-like protein, expressed
LOC_Os07g01610NANA7+374522..376615retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.316.1.S1_at--537--2051Chr07:347901..347925 (25 bp)
ACTTCTTCGCCGGATGGGTCGTCAT
LOC_Os07g01560
Os.316.1.S1_at--335--7191Chr07:347809..347833 (25 bp)
GTCTGGAAGTCCCACTGGTTCTGGC
LOC_Os07g01560
Os.316.1.S1_at--254--6571Chr07:347781..347805 (25 bp)
GATTCATCGGAGACCACGACGTCCA
LOC_Os07g01560
Os.316.1.S1_at--1060--1711Chr07:347720..347744 (25 bp)
ACCATAATCCGCTCACGAATATCGT
LOC_Os07g01560
Os.316.1.S1_at--648--4111Chr07:347705..347729 (25 bp)
CGAATATCGTCGTCCATGTCTCCGT
LOC_Os07g01560
Os.316.1.S1_at--1023--9671Chr07:347681..347705 (25 bp)
TCACGCCCTATATTCTTCTTCTTGT
LOC_Os07g01560
Os.316.1.S1_at--75--551Chr07:347652..347676 (25 bp)
ATCCCCGTGTACAGTAGATGCCTTT
LOC_Os07g01560
Os.316.1.S1_at--712--10391Chr07:347617..347641 (25 bp)
TTTTGTTTTGCCTAGTCAGTCTTCA
LOC_Os07g01560
Os.316.1.S1_at--370--7151Chr07:347599..347623 (25 bp)
GTCTTCAATCTTAATGTACGTGTGT
LOC_Os07g01560
Os.316.1.S1_at--974--3151Chr07:347550..347574 (25 bp)
AATTGCTGTACCTTTCACTGTCAAA
LOC_Os07g01560
Os.316.1.S1_at--708--2331Chr07:347528..347552 (25 bp)
AAAGAGCGTCCCTTGTTACCATTAT
LOC_Os07g01560
Target Sequence 
ACTTCTTCGCCGGATGGGTCGTCATCATGACCGTCTTCATCGCCCTCTTCCTCCCCGAGACCAAGAACGTCCCCATCGAG
GAGATGGTGCTCGTCTGGAAGTCCCACTGGTTCTGGCGCCGATTCATCGGAGACCACGACGTCCACGTCGGCGCCAACCA
CGTCTCCAACAATAAGCTCCAACCATAATCCGCTCACGAATATCGTCGTCCATGTCTCCGTCACGCCCTATATTCTTCTT
CTTGTGTTCATCCCCGTGTACAGTAGATGCCTTTTATTAGTTTGTTTTGTTTTGCCTAGTCAGTCTTCAATCTTAATGTA
CGTGTGTTTCTTGTNTTGGCCAAATTGATCTTAATTGCTGTACCTTTCACTGTCAAAGAGCGTCCCTTGTTACCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis