Browse Element(s) Details


Os.31652.2.S1_x_at

Description gb:NM_184434.1
DB_XREF= gi:34895957
GEN=P0011G08.21
TID=Os.31652.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0011G08.21 (P0011G08.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0011G08.21 (P0011G08.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0632010/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06300Os.14919.1.S1_at3/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06300OsAffx.29313.1.S1_at1/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06310Os.6389.1.S1_at11/111+2996395..2997985expressed protein
LOC_Os01g06320Os.31652.1.S1_at11/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06320Os.31652.2.S1_x_at10/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06330NANA1+3007213..3008966hypothetical protein
LOC_Os01g06340Os.31008.1.S1_at11/111+3010717..3011553expressed protein
LOC_Os01g06350NANA1+3012647..3013219hypothetical protein
LOC_Os01g06360Os.38172.1.S1_x_at5/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06360Os.43567.1.S1_x_at2/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31652.2.S1_x_at--495--2791Chr01:3002317..3002341 (25 bp)
AAGATCGAGGAGCACGTCGGCACCA
LOC_Os01g06320
Os.31652.2.S1_x_at--174--4971Chr01:3001979..3002003 (25 bp)
GCATCACAACGTCGCTGTTCAGAGC
LOC_Os01g06320
Os.31652.2.S1_x_at--742--1371NONE
AGAGCTCCATCGGTGAAAGTTCATT
NONE
Os.31652.2.S1_x_at--125--311Chr01:3001536..3001560 (25 bp)
ATACGAGCATGGACTGGACTGGCAC
LOC_Os01g06320
Os.31652.2.S1_x_at--447--851Chr01:3001501..3001525 (25 bp)
ATGGCAACAGCCAGCATTGTGCAGG
LOC_Os01g06320
Os.31652.2.S1_x_at--593--671Chr01:3001476..3001500 (25 bp)
ATGAAACGATCGAGCTTCCACTATC
LOC_Os01g06320
Os.31652.2.S1_x_at--1150--10671Chr01:3001345..3001485 (25 bp)
TTCCACTATCACCTGATGATCTGCA
LOC_Os01g06320
Os.31652.2.S1_x_at--806--2831Chr01:3001312..3001336 (25 bp)
AAGTATACAGGTTCATCGGCGACAT
LOC_Os01g06320
Os.31652.2.S1_x_at--876--9451Chr01:3001297..3001321 (25 bp)
TCGGCGACATTTTCGATCCAGACTC
LOC_Os01g06320
Os.31652.2.S1_x_at--1051--1391Chr01:3001278..3001302 (25 bp)
AGACTCGCCGTGTCCAGTGGAAACA
LOC_Os01g06320
Os.31652.2.S1_x_at--120--5971Chr01:3000928..3000952 (25 bp)
GAGAAGGTTGCTGTCGACGTATGAT
LOC_Os01g06320
Target Sequence 
AAGATCGAGGAGCACGTCGGCACCAAGACCACCATACAGATCCGCAGCCACGCGCAGAAGTACTTCCTCAAGGTGCAGAA
GATGGGGCTCGCCGCCGGGCTGCCGCCGCAGTACCCGAGGCGGAGGCTCGTCATGCAGCAGCAGCAGCAGCAGAGCTCGC
CGGCGGTGAGCAGCTCGGTGGCGGCGACGGCGATCCTCCACGGGCAGCCGCAGTGCTTGCCGCCGCATCACAACGTCGCT
GTTCAGAGCTCCATCGGTGAAAGTTCATTCATGGGGGCAGCAAGTTTCAGTAATACGAGCATGGACTGGACTGGCACCAC
AAGTGAAATGGCAACAGCCAGCATTGTGCAGGATGAAACGATCGAGCTTCCACTATCACCTGATGATCTGCAATTTGCAC
AAGTATACAGGTTCATCGGCGACATTTTCGATCCAGACTCGCCGTGTCCAGTGGAAACACACCTTCAGAAACTGAAGAGC
ATGGATGATATCATCGTGAAGACGAGAAGGTTGCTGTCGACGTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31652.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis