Browse Element(s) Details


Os.31700.3.A1_at

Description gb:NM_189594.1
DB_XREF= gi:34906271
GEN=P0489A01.21
TID=Os.31700.3
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A01.22 (P0489A01.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0489A01.21 (P0489A01.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g088702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08820OsAffx.23166.1.S1_at11/111+4428540..4430481PHD-finger family protein, expressed
LOC_Os01g08830Os.9695.1.S1_at10/111+4430913..4434756F-box domain containing protein, expressed
LOC_Os01g08840NANA1+4437703..4438170hypothetical protein
LOC_Os01g08850Os.33427.1.S1_at11/111+4441472..4445170expressed protein
LOC_Os01g08860Os.519.1.S1_at11/111+4445845..444667817.5 kDa class II heat shock protein, putative, expressed
LOC_Os01g08870Os.31700.3.A1_at2/111+4450519..4450806expressed protein
LOC_Os01g08880Os.31700.4.S1_x_at1/111+4451557..4453886hypothetical protein
LOC_Os01g08890NANA1+4456152..4463843hypothetical protein
LOC_Os01g08900NANA1+4467272..4470227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g08910Os.10703.2.S1_x_at1/111+4470545..4474530retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31700.3.A1_at--457--2412Chr01:4450747..4450771 (25 bp)
AAACAACCAGAGAAGTCGCCGAGGG
LOC_Os01g08870
Os.31700.3.A1_at--150--3671Chr01:4450773..4450797 (25 bp)
CTTACAGAGCGATTCGAGGCCGAGA
LOC_Os01g08870
Os.31700.3.A1_at--749--3831Chr01:4450925..4450949 (25 bp)
CTGCGTGGCCGAGCTCGAGACAAAA
NONE
Os.31700.3.A1_at--791--7351Chr01:4450973..4450997 (25 bp)
GTGACGACGCGGTCAAGACTCGAGA
NONE
Os.31700.3.A1_at--1126--471Chr01:4451007..4451031 (25 bp)
ATCGGCAGGTTCGTGGCTGGTCCTC
NONE
Os.31700.3.A1_at--889--9571Chr01:4451033..4451057 (25 bp)
TCTTCCTGTCGTGAGTGACTGGGTG
NONE
Os.31700.3.A1_at--938--4231Chr01:4451078..4451102 (25 bp)
CCGATACGATGCAAGCGCGTGGCTG
NONE
Os.31700.3.A1_at--698--4211Chr01:4451143..4451167 (25 bp)
CCGCGTGGGCGAATGAATAGTGAAC
NONE
Os.31700.3.A1_at--1018--3071Chr01:4451158..4451182 (25 bp)
AATAGTGAACAGTACCGACGTGAGG
NONE
Os.31700.3.A1_at--649--771Chr01:4451229..4451253 (25 bp)
ATGTGCTAGTGCTGTTCTGAACCTC
NONE
Os.31700.3.A1_at--905--5431Chr01:4451247..4451271 (25 bp)
GAACCTCTTGCGCATACATTAACAT
NONE
Target Sequence 
AAACAACCAGAGAAGTCGCCGAGGGGCTTACAGAGCGATTCGAGGCCGAGAAAACCCTAGAGGGAGAGGGTGAGACGGGG
TGCCGCGCGGGGGTGGAAAGACGGTGGTGGTCTCCGGGGAGAAGCGACGGCGGCCGTGGATGGCCTCGCCGGGAAGCGAC
GACGGCGAGCAACGGGAGCTGCGTGGCCGAGCTCGAGACAAAAGGGGAACGGCGGCGGCGTCGTAGGTGACGACGCGGTC
AAGACTCGAGAGAATGGGGAATCGGCAGGTTCGTGGCTGGTCCTCCTCTTCCTGTCGTGAGTGACTGGGTGGTGGGCTCA
ATCGGCCTGGCCCGATACGATGCAAGCGCGTGGCTGGGCAGGAGATCGGACGGTGCTGATTGTTGGGGCGACGTGGCCGC
GTGGGCGAATGAATAGTGAACAGTACCGACGTGAGGTTTATAGGATTTTATATGACTAGGGGTGAACGTTGGATAGAAGG
GAATGTGCTAGTGCTGTTCTGAACCTCTTGCGCATACATTAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31700.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis