Browse Element(s) Details


Os.9695.1.S1_at

Description gb:AK106385.1
DB_XREF= gi:32991594
TID=Os.9695.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A01.18 (P0489A01.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E05, full insert sequence.
FL= gb:AK106385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0883010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed
LOC_Os01g08820OsAffx.23166.1.S1_at11/111+4428540..4430481PHD-finger family protein, expressed
LOC_Os01g08830Os.9695.1.S1_at10/111+4430913..4434756F-box domain containing protein, expressed
LOC_Os01g08840NANA1+4437703..4438170hypothetical protein
LOC_Os01g08850Os.33427.1.S1_at11/111+4441472..4445170expressed protein
LOC_Os01g08860Os.519.1.S1_at11/111+4445845..444667817.5 kDa class II heat shock protein, putative, expressed
LOC_Os01g08870Os.31700.3.A1_at2/111+4450519..4450806expressed protein
LOC_Os01g08880Os.31700.4.S1_x_at1/111+4451557..4453886hypothetical protein
LOC_Os01g08890NANA1+4456152..4463843hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9695.1.S1_at--74--7851Chr01:4434466..4434490 (25 bp)
GGTACATGTGGTTAATCCCTTCGCT
LOC_Os01g08830
Os.9695.1.S1_at--1057--531Chr01:4434480..4434504 (25 bp)
ATCCCTTCGCTGAGATAAACCAATG
LOC_Os01g08830
Os.9695.1.S1_at--5--5571Chr01:4434511..4434535 (25 bp)
GAAAGCTACGGTACACATCCCCGTT
LOC_Os01g08830
Os.9695.1.S1_at--1156--451Chr01:4434527..4434551 (25 bp)
ATCCCCGTTGTCTCTGAACTTACTA
LOC_Os01g08830
Os.9695.1.S1_at--32--791Chr01:4434558..4434582 (25 bp)
ATGTGACTGTCGCTAATTTCATAAA
LOC_Os01g08830
Os.9695.1.S1_at--929--10831Chr01:4434587..4434611 (25 bp)
TTGGGCATATCTATAGCACTTCTGT
LOC_Os01g08830
Os.9695.1.S1_at--472--5091Chr01:4434602..4434626 (25 bp)
GCACTTCTGTAGATAAATCAACTGT
LOC_Os01g08830
Os.9695.1.S1_at--1009--9451Chr01:4434626..4434650 (25 bp)
TCTGAACTTTGGACAACTCGTGGTT
LOC_Os01g08830
Os.9695.1.S1_at--933--1991Chr01:4434641..4434665 (25 bp)
ACTCGTGGTTTGTGATTATCGTGTA
LOC_Os01g08830
Os.9695.1.S1_at--819--9751Chr01:4434711..4434735 (25 bp)
TAAGTTATCCTTGTCCAAATTGTTT
LOC_Os01g08830
Os.9695.1.S1_at--488--9851Chr01:4434735..4434759 (25 bp)
TAAATTATCATCACCCGGTCAGAAA
NONE
Target Sequence 
GGTACATGTGGTTAATCCCTTCGCTGAGATAAACCAATGGAGGATGAAAGCTACGGTACACATCCCCGTTGTCTCTGAAC
TTACTACAGTATATGTGACTGTCGCTAATTTCATAAAAGTATTGGGCATATCTATAGCACTTCTGTAGATAAATCAACTG
TCTGAACTTTGGACAACTCGTGGTTTGTGATTATCGTGTATTTTGTAATATATATATATATATATATATATATATATATA
TTATATAAGTTATCCTTGTCCAAATTGTTTAAATTATCATCACCCGGTCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis