Browse Element(s) Details


Os.33427.1.S1_at

Description gb:AK071130.1
DB_XREF= gi:32981153
TID=Os.33427.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A01.19 (P0489A01.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078C01, full insert sequence.
FL= gb:AK100604.1 gb:AK071130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0885011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed
LOC_Os01g08820OsAffx.23166.1.S1_at11/111+4428540..4430481PHD-finger family protein, expressed
LOC_Os01g08830Os.9695.1.S1_at10/111+4430913..4434756F-box domain containing protein, expressed
LOC_Os01g08840NANA1+4437703..4438170hypothetical protein
LOC_Os01g08850Os.33427.1.S1_at11/111+4441472..4445170expressed protein
LOC_Os01g08860Os.519.1.S1_at11/111+4445845..444667817.5 kDa class II heat shock protein, putative, expressed
LOC_Os01g08870Os.31700.3.A1_at2/111+4450519..4450806expressed protein
LOC_Os01g08880Os.31700.4.S1_x_at1/111+4451557..4453886hypothetical protein
LOC_Os01g08890NANA1+4456152..4463843hypothetical protein
LOC_Os01g08900NANA1+4467272..4470227retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33427.1.S1_at--939--2971Chr01:4444593..4444617 (25 bp)
AATGTGCTGCACAGGATTTCGGAGA
LOC_Os01g08850
Os.33427.1.S1_at--592--2371Chr01:4444626..4444650 (25 bp)
AACACCTGAGTTGACGTCGAACGCC
LOC_Os01g08850
Os.33427.1.S1_at--784--7611Chr01:4444675..4444699 (25 bp)
GGGAGATGATCCTGAACCTGTTCAG
LOC_Os01g08850
Os.33427.1.S1_at--793--5931Chr01:4444704..4444728 (25 bp)
GAGCAGAGCAGTTCTGACCCACAGA
LOC_Os01g08850
Os.33427.1.S1_at--330--8051Chr01:4444730..4444754 (25 bp)
GGAGACTTGTAACCTGTGCAGTACT
LOC_Os01g08850
Os.33427.1.S1_at--880--9911Chr01:4444751..4444775 (25 bp)
TACTGCCATGCTTGTTTGTAGCCCT
LOC_Os01g08850
Os.33427.1.S1_at--512--6971Chr01:4444768..4444792 (25 bp)
GTAGCCCTTGCTGGTGGAAACGATG
LOC_Os01g08850
Os.33427.1.S1_at--1050--451Chr01:4444803..4444827 (25 bp)
ATCTGCAATTCGTTGGAGACATCGG
LOC_Os01g08850
Os.33427.1.S1_at--271--1751Chr01:4444843..4444867 (25 bp)
ACCTTTTCTTGTCCTCTGCAAAAAT
LOC_Os01g08850
Os.33427.1.S1_at--470--2251Chr01:4444892..4444916 (25 bp)
AAATATTGGCGCATGTTAGATTACC
LOC_Os01g08850
Os.33427.1.S1_at--1137--7731Chr01:4444943..4444967 (25 bp)
GGTGTAGCCTTATCAAATGTTCACA
LOC_Os01g08850
Target Sequence 
AATGTGCTGCACAGGATTTCGGAGAGGGACATAAACACCTGAGTTGACGTCGAACGCCCTTCTCCTTTGCCACCACCGTT
CGGGGAGATGATCCTGAACCTGTTCAGAACAGAGCAGAGCAGTTCTGACCCACAGATGGAGACTTGTAACCTGTGCAGTA
CTGCCATGCTTGTTTGTAGCCCTTGCTGGTGGAAACGATGATATATCATTATCTGCAATTCGTTGGAGACATCGGAAAAT
CAAAATTTTGACCTTTTCTTGTCCTCTGCAAAAATTGACCGTCAAAATTTAGTAATGTCAAATATTGGCGCATGTTAGAT
TACCAAAATTTCGTAGTGTTGGAATGTGTAGGTGTAGCCTTATCAAATGTTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis