Browse Element(s) Details


Os.28952.1.S1_at

Description gb:AK110852.1
DB_XREF= gi:32996061
TID=Os.28952.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (P0489A01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-C07, full insert sequence.
FL= gb:AK110852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0881011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed
LOC_Os01g08820OsAffx.23166.1.S1_at11/111+4428540..4430481PHD-finger family protein, expressed
LOC_Os01g08830Os.9695.1.S1_at10/111+4430913..4434756F-box domain containing protein, expressed
LOC_Os01g08840NANA1+4437703..4438170hypothetical protein
LOC_Os01g08850Os.33427.1.S1_at11/111+4441472..4445170expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28952.1.S1_at--520--3931Chr01:4419482..4419506 (25 bp)
CGGCACGAGCGCTCGTGCAAGTTCG
LOC_Os01g08810
Os.28952.1.S1_at--214--8711Chr01:4419636..4419660 (25 bp)
TGTCCATCATCCTCCACATGAGGGA
LOC_Os01g08810
Os.28952.1.S1_at--1114--551Chr01:4419644..4419668 (25 bp)
ATCCTCCACATGAGGGATGGACTGA
LOC_Os01g08810
Os.28952.1.S1_at--1034--5971Chr01:4419685..4419709 (25 bp)
GAGACAAGAGGATTGAACCAACTTC
LOC_Os01g08810
Os.28952.1.S1_at--538--8131Chr01:4419714..4419738 (25 bp)
GGACACTTTGGAACGAACCATACAG
LOC_Os01g08810
Os.28952.1.S1_at--833--2631Chr01:4419729..4419753 (25 bp)
AACCATACAGTTCGAGGTTTCGTAT
LOC_Os01g08810
Os.28952.1.S1_at--742--6811Chr01:4419809..4419833 (25 bp)
GTTTAGATATGGGTGCTCTGCAATC
LOC_Os01g08810
Os.28952.1.S1_at--67--7791Chr01:4419820..4419844 (25 bp)
GGTGCTCTGCAATCTACAAGAGCTA
LOC_Os01g08810
Os.28952.1.S1_at--209--3231Chr01:4419836..4419860 (25 bp)
CAAGAGCTATTAGGGCATACATGCA
LOC_Os01g08810
Os.28952.1.S1_at--706--10071Chr01:4419846..4419870 (25 bp)
TAGGGCATACATGCACTGATGATAC
LOC_Os01g08810
Os.28952.1.S1_at--475--6291Chr01:4419863..4419887 (25 bp)
GATGATACTGTGCTCCATTGATTAA
LOC_Os01g08810
Target Sequence 
CGGCACGAGCGCTCGTGCAAGTTCGCCGCGTTCAACGTCGGCCCGCGCACGTGCCTCGGCCGCGACCTCGCGTTCGCGCA
GATGAAGGCCGTCGTCGCCGCCGTCGTGCCGCGGTTCCGTGTCGCCGCCGCCGCGGCGCCGCCGCGGCCCAAGCTGTCCA
TCATCCTCCACATGAGGGATGGACTGAAGGTGAAGGTGCACAGGAGACAAGAGGATTGAACCAACTTCNNTTGGACACTT
TGGAACGAACCATACAGTTCGAGGTTTCGTATTGATATANCAGAAAAACATTGTTTNNNNTCATATTGATATAGCAGAAA
AAATATTGTTTAGATATGGGTGCTCTGCAATCTACAAGAGCTATTAGGGCATACATGCACTGATGATACTGTGCTCCATT
GATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis