Browse Element(s) Details


OsAffx.10973.1.S1_s_at

Description gb:NM_189581.1
DB_XREF= gi:34906245
GEN=P0489A01.8
TID=OsAffx.10973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0489A01.8 (P0489A01.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0876011/11Choline/ethanolamine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0004103molecular_functioncholine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10973.1.S1_s_at--570--4331Chr01:4393727..4393751 (25 bp)
CCAGGAGTATGCAAGGCAGCGGTTC
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--141--6911Chr01:4393733..4393757 (25 bp)
GTATGCAAGGCAGCGGTTCGATCAG
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--479--9011Chr01:4393736..4393760 (25 bp)
TGCAAGGCAGCGGTTCGATCAGTAC
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--223--5191Chr01:4393737..4393761 (25 bp)
GCAAGGCAGCGGTTCGATCAGTACT
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--489--3211Chr01:4393738..4393762 (25 bp)
CAAGGCAGCGGTTCGATCAGTACTG
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--642--911Chr01:4393740..4393764 (25 bp)
AGGCAGCGGTTCGATCAGTACTGGA
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--664--8251Chr01:4393741..4393765 (25 bp)
GGCAGCGGTTCGATCAGTACTGGAA
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--660--5071Chr01:4393742..4393766 (25 bp)
GCAGCGGTTCGATCAGTACTGGAAG
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--1014--1611Chr01:4393744..4393768 (25 bp)
AGCGGTTCGATCAGTACTGGAAGAC
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--1067--3951Chr01:4393746..4393770 (25 bp)
CGGTTCGATCAGTACTGGAAGACAA
LOC_Os01g08760
OsAffx.10973.1.S1_s_at--322--6711Chr01:4393748..4393772 (25 bp)
GTTCGATCAGTACTGGAAGACAAAA
LOC_Os01g08760
Target Sequence 
CCAGGAGTATGCAAGGCAGCGGTTCGATCAGTACTGGAAGACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10973.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis