Browse Element(s) Details


OsAffx.10973.2.S1_at

Description tigr:9629.m00819
TID=OsAffx.10973.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cholineethanolamine kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0876010/11Choline/ethanolamine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0004103molecular_functioncholine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10973.2.S1_at--327--3091Chr01:4393186..4393316 (25 bp)
AATACCCTGGCATTGACGAACAACG
LOC_Os01g08760
OsAffx.10973.2.S1_at--695--9951Chr01:4393188..4393318 (25 bp)
TACCCTGGCATTGACGAACAACGCA
LOC_Os01g08760
OsAffx.10973.2.S1_at--962--8491Chr01:4393300..4393323 (24 bp)
TGGCATTGACGAACAACGCAGATTT
LOC_Os01g08760
OsAffx.10973.2.S1_at--1142--2591Chr01:4393313..4393337 (25 bp)
AACGCAGATTTGTTCAAACGTACCT
LOC_Os01g08760
OsAffx.10973.2.S1_at--462--211Chr01:4393320..4393344 (25 bp)
ATTTGTTCAAACGTACCTCAGCTCT
LOC_Os01g08760
OsAffx.10973.2.S1_at--574--8791Chr01:4393323..4393347 (25 bp)
TGTTCAAACGTACCTCAGCTCTTCA
LOC_Os01g08760
OsAffx.10973.2.S1_at--964--2371NONE
AAACGTACCTCAGCTCTTCAGGTGA
NONE
OsAffx.10973.2.S1_at--880--1891Chr01:4393330..4393350 (21 bp)
ACGTACCTCAGCTCTTCAGGTGAGA
LOC_Os01g08760
OsAffx.10973.2.S1_at--131--6991Chr01:4393332..4393500 (25 bp)
GTACCTCAGCTCTTCAGGTGAGAAC
LOC_Os01g08760
OsAffx.10973.2.S1_at--418--9651Chr01:4393337..4393505 (25 bp)
TCAGCTCTTCAGGTGAGAACCCATC
LOC_Os01g08760
OsAffx.10973.2.S1_at--189--3391Chr01:4393338..4393506 (25 bp)
CAGCTCTTCAGGTGAGAACCCATCA
LOC_Os01g08760
Target Sequence 
AATACCCTGGCATTGACGAACAACGCAGATTTGTTCAAACGTACCTCAGCTCTTCAGGTGAGAACCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10973.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis