Browse Element(s) Details


OsAffx.10973.2.S1_s_at

Description tigr:9629.m00819
TID=OsAffx.10973.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cholineethanolamine kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0876011/11Choline/ethanolamine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0004103molecular_functioncholine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10973.2.S1_s_at--569--4331Chr01:4393727..4393751 (25 bp)
CCAGGAGTATGCAAGGCAGCGGTTC
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--224--5191Chr01:4393737..4393761 (25 bp)
GCAAGGCAGCGGTTCGATCAGTACT
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--1109--4671Chr01:4393745..4393769 (25 bp)
GCGGTTCGATCAGTACTGGAAGACA
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--176--2611Chr01:4393778..4393802 (25 bp)
AACGCTGGGATCCAAATCCAACTAG
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--233--3711Chr01:4393799..4393823 (25 bp)
CTAGTTGATCACACAGACACACAGA
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--406--5631Chr01:4393814..4393838 (25 bp)
GACACACAGAGCATTCTTCTTTCAT
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--208--1551Chr01:4393823..4393847 (25 bp)
AGCATTCTTCTTTCATGTCTTGTGA
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--498--3511Chr01:4393836..4393860 (25 bp)
CATGTCTTGTGATCCTTTTCTTTTA
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--325--6371Chr01:4393846..4393870 (25 bp)
GATCCTTTTCTTTTATATAGCTTTG
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--80--4891Chr01:4393865..4393889 (25 bp)
GCTTTGTCTAGTCTTGTGAATTCTC
LOC_Os01g08760
OsAffx.10973.2.S1_s_at--800--111Chr01:4393884..4393908 (25 bp)
ATTCTCAATTGTGTGTGTCTGTAGC
LOC_Os01g08760
Target Sequence 
CCAGGAGTATGCAAGGCAGCGGTTCGATCAGTACTGGAAGACAAAAGATCAAACGCTGGGATCCAAATCCAACTAGTTGA
TCACACAGACACACAGAGCATTCTTCTTTCATGTCTTGTGATCCTTTTCTTTTATATAGCTTTGTCTAGTCTTGTGAATT
CTCAATTGTGTGTGTCTGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10973.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis